Parental gene:

Eef1g, ENSRNOG00000020075

Aliases:None
Description:Elongation factor 1-gamma [Source:UniProtKB/Swiss-Prot;Acc:Q68FR6]
Organism:Rat (Rattus norvegicus)
Coordinates:1:232100964..232111615(+)


>ENSRNOG00000020075
ATGGCGGCTGGGACCCTGTACACATACCCTGAAAACTGGAGGGCCTTCAAGGCCCTCATCGCTGCTCAGTACAGCGGGGC
TCAGATCCGCGTGCTCTCCGCACCACCCCACTTCCACTTCGGCCAAACCAACCGCACCCCCGAATTTCTCAGAAAATTTC
CTGCGGGCAAGGTTCCAGCCTTTGAGGGCGATGACGGATTCTGCGTATTTGAGAGCAATGCCATCGCCTATTACGTAAGC
AATGAGGAGCTACGGGGAAGTACACCAGAGGCAGCAGCGCAAGTGGTGCAGTGGGTGAGCTTTGCTGACAGTGACATCGT
CCCTCCAGCCAGCACCTGGGTGTTCCCCACCTTAGGCATTATGCACCACAACAAGCAGGCCACTGAAAATGCCAAAGAGG
AGGTGAAGCGAATCTTGGGGCTGCTGGACACTCATCTGAAGACACGGACTTTTCTGGTTGGTGAGAGAGTAACACTGGCT
GACATCACGGTTGTCTGTACCCTATTGTGGCTCTATAAACAGGTCTTAGAGCCTTCTTTTCGCCAGGCCTTCCCCAATAC
CAACCGATGGTTCCTTACCTGCATTAACCAGCCCCAGTTCAGGGCCATCTTGGGGGAGGTGAAGCTGTGTGAAAAGATGG
CTCAGTTTGATGCTAAGAAGTTCGCAGAGAGCCAGCCAAAAAAGGATACCCCGAGGAAAGAAAAGGGCTCACGAGAAGAG
AAGCAGAAGCCCCAGACTGAGCGGAAAGAGGAAAAAAAGGCAGCTGCCCCAGCTCCTGAGGAAGAGATGGATGAGTGTGA
GCAGGCATTGGCTGCTGAGCCCAAGGCCAAGGACCCTTTCGCTCACCTGCCCAAGAGTACCTTTGTGTTGGATGAGTTTA
AGCGAAAGTACTCCAATGAGGACACCCTCTCTGTGGCGCTGCCATATTTTTGGGAGCATTTTGATAAGGATGGCTGGTCC
CTGTGGTATGCTGAGTACCGCTTCCCTGAAGAGCTCACCCAGACCTTCATGAGCTGTAACCTCATCACTGGGATGTTTCA
GCGATTGGACAAACTGAGAAAGAATGCCTTTGCTAGTGTTATCCTGTTTGGAACCAACAACAGCAGCTCCATTTCTGGGG
TTTGGGTCTTCCGAGGCCAAGATCTTGCCTTTCCGCTGAGTCCAGATTGGCAGGTGGACTATGAGTCATATACATGGCGG
AAACTGGATCCTGGTAGCGAGGAGACCCAGACCCTCGTTCGAGAGTACTTTTCCTGGGAGGGGGCCTTCCAGCACGTTGG
CAAAGCCGTCAATCAAGGCAAGATCTTCAAGTGA

Library Parental gene expression (RPM)
SRP017611_brain 200 .73 RPM
SRP017611_kidney 220 .51 RPM
SRP017611_liver 123 .52 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006745 possible_ortholog 1 retrogene
retro_amel_772,
Bos taurus ENSBTAG00000011843 possible_ortholog 1 retrogene
retro_btau_1600,
Canis familiaris ENSCAFG00000015834 possible_ortholog 6 retrogenes
retro_cfam_1241, retro_cfam_1398, retro_cfam_1862, retro_cfam_478, retro_cfam_638, retro_cfam_653,
Callithrix jacchus ENSCJAG00000018949 possible_ortholog 6 retrogenes
retro_cjac_1464, retro_cjac_1770, retro_cjac_1942, retro_cjac_3147, retro_cjac_841, retro_cjac_874,
Equus caballus ENSECAG00000014334 possible_ortholog 1 retrogene
retro_ecab_419,
Erinaceus europaeus ENSEEUG00000001231 ortholog_one2one 1 retrogene
retro_eeur_575,
Homo sapiens ENSG00000254772 ortholog_one2one 4 retrogenes
retro_hsap_2778, retro_hsap_2982, retro_hsap_3906, retro_hsap_4744,
Gorilla gorilla ENSGGOG00000013557 ortholog_one2one 12 retrogenes
retro_ggor_1935, retro_ggor_1936, retro_ggor_1991, retro_ggor_1992, retro_ggor_2064, retro_ggor_2065, retro_ggor_2214, retro_ggor_243, retro_ggor_2542, retro_ggor_2633, retro_ggor_2946, retro_ggor_2947,
Latimeria chalumnae ENSLACG00000014700 ortholog_one2many 1 retrogene
retro_lcha_82,
Loxodonta africana ENSLAFG00000003339 ortholog_one2many 1 retrogene
retro_lafr_381,
Myotis lucifugus ENSMLUG00000000342 possible_ortholog 1 retrogene
retro_mluc_1110,
Macaca mulatta ENSMMUG00000006598 ortholog_one2one 5 retrogenes
retro_mmul_1447, retro_mmul_1905, retro_mmul_2528, retro_mmul_736, retro_mmul_802,
Monodelphis domestica ENSMODG00000007691 possible_ortholog 1 retrogene
retro_mdom_68,
Mustela putorius furo ENSMPUG00000013942 possible_ortholog 2 retrogenes
retro_mputfur_427, retro_mputfur_944,
Mus musculus ENSMUSG00000071644 ortholog_one2one 7 retrogenes
retro_mmus_1447, retro_mmus_1839, retro_mmus_2350, retro_mmus_2765, retro_mmus_3080, retro_mmus_425, retro_mmus_989,
Nomascus leucogenys ENSNLEG00000003528 ortholog_one2many 2 retrogenes
retro_nleu_1510, retro_nleu_681,
Oryctolagus cuniculus ENSOCUG00000020959 possible_ortholog 3 retrogenes
retro_ocun_1693, retro_ocun_369, retro_ocun_693,
Otolemur garnettii ENSOGAG00000000827 possible_ortholog 1 retrogene
retro_ogar_1344,
Ochotona princeps ENSOPRG00000014563 possible_ortholog 1 retrogene
retro_opri_814,
Pongo abelii ENSPPYG00000029434 possible_ortholog 5 retrogenes
retro_pabe_2237, retro_pabe_2378, retro_pabe_2409, retro_pabe_2473, retro_pabe_3690,
Pan troglodytes ENSPTRG00000003768 ortholog_one2many 3 retrogenes
retro_ptro_1879, retro_ptro_2017, retro_ptro_3159,
Pteropus vampyrus ENSPVAG00000003440 possible_ortholog 1 retrogene
retro_pvam_1239,
Sorex araneus ENSSARG00000011232 possible_ortholog 1 retrogene
retro_sara_718,
Sus scrofa ENSSSCG00000013064 possible_ortholog 1 retrogene
retro_sscr_164,
Ictidomys tridecemlineatus ENSSTOG00000002851 ortholog_one2one 2 retrogenes
retro_itri_852, retro_itri_886,
Tursiops truncatus ENSTTRG00000002459 possible_ortholog 3 retrogenes
retro_ttru_1082, retro_ttru_1544, retro_ttru_1603,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_979 94.53 100.00
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2. retro_rnor_1312 89.09 76.89
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3. retro_rnor_2126 90.46 68.42
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4. retro_rnor_2235 87.67 100.00
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5. retro_rnor_2269 92.24 100.00
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6. retro_rnor_2468 80.62 65.68
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7. retro_rnor_2617 85.67 68.65
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8. retro_rnor_2928 93.81 99.77
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Download FASTA sequences of all ENSRNOG00000020075 retrocopies