Parental gene:

ENSCAFG00000015834

Aliases:None
Description:None
Organism:Dog (Canis familiaris)
Coordinates:18:54062566..54075093(+)


>ENSCAFG00000015834
ATGGCGGCCGGGACCCTGTACACATATCCTGAAAACTGGAGGGCCTTCAAGGCTCTCATTGCTGCTCAGTACAGCGGGGC
TCAGGTCCGCGTGCTCTCCGCACCACCCCACTTCCACTTCGGCCAAACCAACCGCACCCCTGAATTTCTCCGTAAATTTC
CTGCCGGCAAGGTTCCAGCATTTGAGGGTGACGATGGATTCTGTGTGTTTGAGAGCAATGCCATTGCCTACTATGTGAGC
AATGAGGAGCTGCGGGGAAATACTCCAGAGGCAGCAGCCCAGGTGGTGCAGTGGGTGAGCTTTGCTGATAGCGACATAGT
GCCCCCAGCCAGTACCTGGGTGTTTCCTACCTTGGGCATCATGCACCACAACAAGCAGGCCACAGAGAATGCAAAGGAGG
AAGTGAGGCGAATTCTGGGGCTCCTGGATACTCATTTGAAGACGAGGACTTTTCTGGTGGGCGAACGTGTGACACTGGCT
GACATCACAGTTGTCTGCACCCTGTTGTGGCTCTATAAACAGGTCCTGGAGCCTTCTTTCCGCCAGGCCTTCCCCAATAC
CAACCGCTGGTTCCTTACCTGCATTAACCAGCCCCAGTTCCGGGCTGTCTTGGGGGAGGTGAAACTCTGTGAGAAGATGG
CCCAGTTTGATGCTAAAAAGTTTGCAGAGAGCCAACCTAAAAAAGACACCCCACGGAAAGAGAAGGGTTCTCGGGAAGAG
AAGCAGAAGCCCCAGGCTGAGCGGAAAGAGGAGAAGAAGGCTGCTGCCCCTGCTCCTGAGGAGGAAATGGATGAATGTGA
GCAGGCACTGGCTGCTGAGCCAAAGGCCAAAGACCCCTTTGCTCACCTGCCCAAGAGTACCTTTGTGTTGGACGAATTTA
AGCGCAAGTACTCCAATGAGGACACTCTCACTGTGGCACTGCCGTATTTCTGGGAGCACTTCGATAAGGATGGCTGGTCC
CTGTGGTACGCTGAGTACCGCTTCCCTGAGGAGCTCACTCAGACCTTTATGAGTTGTAACCTCATCACTGGAATGTTCCA
ACGGTTGGACAAGCTGAGGAAGAATGCCTTTGCCAGTGTCATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGAG
TCTGGGTCTTCCGAGGCCAGGAGCTTGCCTTTCCGCTGAGTCCAGATTGGCAGGTGGACTACGAGTCCTATACGTGGCGG
AAACTGGATCCTGGCAGCGAGGAGACCCAGACGCTGGTTCGAGAGTACTTTTCCTGGGAGGGGGCCTTCCAGCATGTGGG
CAAAACCTTCAATCAGGGCAAGATCTTCAAGTAA

Library Parental gene expression (RPM)
SRP012049_cerebellum 70 .47 RPM
SRP017611_brain 32 .95 RPM
SRP017611_kidney 245 .66 RPM
SRP017611_liver 68 .74 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006745 ortholog_one2many 1 retrogene
retro_amel_772,
Bos taurus ENSBTAG00000011843 possible_ortholog 1 retrogene
retro_btau_1600,
Callithrix jacchus ENSCJAG00000018949 ortholog_one2many 6 retrogenes
retro_cjac_1464, retro_cjac_1770, retro_cjac_1942, retro_cjac_3147, retro_cjac_841, retro_cjac_874,
Equus caballus ENSECAG00000014334 ortholog_one2many 1 retrogene
retro_ecab_419,
Erinaceus europaeus ENSEEUG00000001231 possible_ortholog 1 retrogene
retro_eeur_575,
Homo sapiens ENSG00000254772 possible_ortholog 4 retrogenes
retro_hsap_2778, retro_hsap_2982, retro_hsap_3906, retro_hsap_4744,
Gorilla gorilla ENSGGOG00000013557 possible_ortholog 12 retrogenes
retro_ggor_1935, retro_ggor_1936, retro_ggor_1991, retro_ggor_1992, retro_ggor_2064, retro_ggor_2065, retro_ggor_2214, retro_ggor_243, retro_ggor_2542, retro_ggor_2633, retro_ggor_2946, retro_ggor_2947,
Latimeria chalumnae ENSLACG00000014700 ortholog_one2many 1 retrogene
retro_lcha_82,
Loxodonta africana ENSLAFG00000003339 ortholog_one2many 1 retrogene
retro_lafr_381,
Myotis lucifugus ENSMLUG00000000342 possible_ortholog 1 retrogene
retro_mluc_1110,
Macaca mulatta ENSMMUG00000006598 possible_ortholog 5 retrogenes
retro_mmul_1447, retro_mmul_1905, retro_mmul_2528, retro_mmul_736, retro_mmul_802,
Monodelphis domestica ENSMODG00000007691 possible_ortholog 1 retrogene
retro_mdom_68,
Mustela putorius furo ENSMPUG00000013942 ortholog_one2many 2 retrogenes
retro_mputfur_427, retro_mputfur_944,
Mus musculus ENSMUSG00000071644 possible_ortholog 7 retrogenes
retro_mmus_1447, retro_mmus_1839, retro_mmus_2350, retro_mmus_2765, retro_mmus_3080, retro_mmus_425, retro_mmus_989,
Nomascus leucogenys ENSNLEG00000003528 possible_ortholog 2 retrogenes
retro_nleu_1510, retro_nleu_681,
Oryctolagus cuniculus ENSOCUG00000020959 ortholog_one2many 3 retrogenes
retro_ocun_1693, retro_ocun_369, retro_ocun_693,
Otolemur garnettii ENSOGAG00000000827 possible_ortholog 1 retrogene
retro_ogar_1344,
Ochotona princeps ENSOPRG00000014563 possible_ortholog 1 retrogene
retro_opri_814,
Pongo abelii ENSPPYG00000029434 ortholog_one2many 5 retrogenes
retro_pabe_2237, retro_pabe_2378, retro_pabe_2409, retro_pabe_2473, retro_pabe_3690,
Pan troglodytes ENSPTRG00000003768 possible_ortholog 3 retrogenes
retro_ptro_1879, retro_ptro_2017, retro_ptro_3159,
Pteropus vampyrus ENSPVAG00000003440 possible_ortholog 1 retrogene
retro_pvam_1239,
Rattus norvegicus ENSRNOG00000020075 possible_ortholog 8 retrogenes
retro_rnor_1312, retro_rnor_2126, retro_rnor_2235, retro_rnor_2269, retro_rnor_2468, retro_rnor_2617, retro_rnor_2928, retro_rnor_979,
Sorex araneus ENSSARG00000011232 possible_ortholog 1 retrogene
retro_sara_718,
Sus scrofa ENSSSCG00000013064 possible_ortholog 1 retrogene
retro_sscr_164,
Ictidomys tridecemlineatus ENSSTOG00000002851 possible_ortholog 2 retrogenes
retro_itri_852, retro_itri_886,
Tursiops truncatus ENSTTRG00000002459 possible_ortholog 3 retrogenes
retro_ttru_1082, retro_ttru_1544, retro_ttru_1603,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_478 94.32 100.00
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2. retro_cfam_638 93.13 59.27
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3. retro_cfam_653 95.90 100.00
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4. retro_cfam_1241 83.60 100.00
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5. retro_cfam_1398 93.59 99.77
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6. retro_cfam_1862 98.17 100.00
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Download FASTA sequences of all ENSCAFG00000015834 retrocopies