Parental gene: | EEF1G, ENSCJAG00000018949 |
| Aliases: | None |
| Description: | eukaryotic translation elongation factor 1 gamma [Source:HGNC Symbol;Acc:3213] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 11:118232650..118246410(-) |
>ENSCJAG00000018949
ATGGCAGAACGGTGGGTGGCTCTAGCAGTACCGAGGAGAGCCAGGTTTGCCTCCACATTCCCTGCACCCCAGATTTATGG
GGACAAGGATGGAGGTTTGCGTTCAGGGTTTTTCATTCTCCTTAAACGAGGAGAGTTCATTCCGTTCTCAAATTGGACCC
TGTACACGTATCCTGAAAACTGGAGGGCTTTCAAGGCCCTCATCGCTGCTCAGTACAGCGGGGCTCAGGTCCGCGTGCTC
TCCGCACCACCCCACTTCCACTTTGGCCAAACCAACCGCACCCCTGAATTTCTCCGCAAATTTCCTGCCGGCAAGGTTCC
AGCATTTGAGGGTGACGACGGATTCTGTGTGTTTGAGAGCAATGCCATTGCCTACTATGTGAGCAATGAGGAGCTGCGGG
GAAGTACTCCAGAGGCAGCCGCCCAGGTGGTGCAGTGGGTGAGCTTTGCTGATAGCGACATAGTACCTCCAGCCAGTACC
TGGGTGTTCCCCACCTTGGGCATCATGCACCACAACAAACAGGCCACTGAGAATGCGAAGGAGGAAGTGAGGCGAATTCT
GGGGCTGCTGGATGCTCACTTGAAGACAAGGACTTTTCTGGTGGGCGAACGAGTGACACTGGCTGACATCACAGTTGTCT
GCACTTTGTTGTGGCTTTATAAGCAGGTCCTAGAGCCTTCTTTCCGCCAGGCCTTTCCCAATACCAACCGCTGGTTCCTC
ACCTGCATTAACCAGCCCCAGTTCCGGGCTGTCTTGGGGGAAGTGAAACTGTGTGAGAAGATGGCCCAGTTTGATGCTAA
AAAGTTTGCAGAGAGCCAACCTAAAAGGGACACACCACGGAAAGAGAAGGGTTCACGGGAAGAGAAGCAGAAACCCCAGG
CTGAGCGGAAGGAGGAAAAAAAGGCAGCTGCCCCTGCTCCTGAGGAGGAGATGGATGAATGTGAGCAGGCGCTGGCTGCT
GAGCCCAAGGCCAAAGACCCCTTTGCTCACCTGCCCAAAAGTACCTTTGTGTTGGATGAATTTAAGCGCAAGTACTCCAA
TGAGGACACTCTCTCTGTGGCACTGCCATATTTCTGGGAGCACTTTGATAAGGACGGCTGGTCCCTGTGGTACTCAGAGT
ATCGCTTCCCAGAAGAACTCACTCAGACCTTCATGAGCTGCAATCTCATCACTGGAATGTTCCAGCGACTGGACAAGCTG
AGGAAGAATGCCTTCGCCAGTGTCATCCTCTTTGGAACCAACAATAGTAGCTCAATTTCTGGAGTCTGGGTCTTCCGAGG
CCAGGAGCTTGCCTTTCCGCTGAGTCCAGATTGGCAGGTGGACTACGAGTCATACACGTGGCGGAAACTGGATCCTGGCA
GCGAGGAGGCCCAGACACTGGTTCGAGAGTATTTCTCCTGGGAGGGGGCCTTCCAGCACGTGGGCAAAGCCTTCAATCAG
GGCAAGATCTTCAAGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_colon | 266 .83 RPM |
| SRP051959_heart | 225 .85 RPM |
| SRP051959_kidney | 205 .91 RPM |
| SRP051959_liver | 203 .24 RPM |
| SRP051959_lung | 189 .37 RPM |
| SRP051959_lymph_node | 312 .64 RPM |
| SRP051959_skeletal_muscle | 248 .58 RPM |
| SRP051959_spleen | 287 .10 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000006745 | ortholog_one2one | 1 retrogene | |
| Bos taurus | ENSBTAG00000011843 | possible_ortholog | 1 retrogene | |
| Canis familiaris | ENSCAFG00000015834 | ortholog_one2many | 6 retrogenes | |
| Equus caballus | ENSECAG00000014334 | ortholog_one2one | 1 retrogene | |
| Latimeria chalumnae | ENSLACG00000014700 | ortholog_one2many | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000003339 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000000342 | possible_ortholog | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000007691 | possible_ortholog | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000013942 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000003528 | possible_ortholog | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000020959 | ortholog_one2one | 3 retrogenes | |
| Otolemur garnettii | ENSOGAG00000000827 | possible_ortholog | 1 retrogene | |
| Ochotona princeps | ENSOPRG00000014563 | possible_ortholog | 1 retrogene | |
| Pongo abelii | ENSPPYG00000029434 | ortholog_one2one | 5 retrogenes | |
| Pan troglodytes | ENSPTRG00000003768 | possible_ortholog | 3 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000003440 | possible_ortholog | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000020075 | possible_ortholog | 8 retrogenes | |
| Sorex araneus | ENSSARG00000011232 | possible_ortholog | 1 retrogene | |
| Sus scrofa | ENSSSCG00000013064 | possible_ortholog | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000002459 | possible_ortholog | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_841 | 95.19 | 100.00 | Please wait, loading  |
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| 2. | retro_cjac_874 | 90.91 | 67.96 | Please wait, loading |
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| 3. | retro_cjac_1464 | 95.88 | 100.00 | Please wait, loading |
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| 4. | retro_cjac_1770 | 98.86 | 100.00 | Please wait, loading |
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| 5. | retro_cjac_1942 | 81.93 | 56.29 | Please wait, loading |
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| 6. | retro_cjac_3147 | 94.06 | 100.00 | Please wait, loading |
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Download FASTA sequences of all ENSCJAG00000018949 retrocopies