Parental gene:

EEF1G, ENSPTRG00000003768

Aliases:None
Description:eukaryotic translation elongation factor 1 gamma [Source:HGNC Symbol;Acc:3213]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:11:60480363..60495741(-)


>ENSPTRG00000003768
ATGGCAGAGCGGTGGGTGGCTCCAGCAGTACTGAGAAGAGCCAGGTTTGCCTCCACATTCTTCCTGTCGCCTCAGATTTA
TGCGCACAAGGACGGAGATTTGCGTTCAGGGTTCTTCATTCTCTCCTTTAAACGAGGAGAGTTCATCCCGTTCTTAAACT
GGACCCTGTACACGTATCCTGAAAACTGGAGGGCCTTCAAGGCTCTCATCGCTGCTCAGTACAGCGGGGCTCAGGTCCGC
GTGCTCTCCGCACCACCCCACTTCCATTTTGGCCAAACCAACCGCACCCCTGAATTTCTCCGCAAATTTCCTGCCGGCAA
GGTCCCAGCATTTGAGGGTGATGATGGATTCTGTGTGTTTGAGAGCAACGCCATTGCCTACTATGTGAGCAATGAGGAGC
TGCGGGGAAGTACTCCAGAGGCAGCAGCCCAAGTGGTGCAGTGGGTGAGCTTTGCTGATTCCGATATAGTGCCCCCAGCC
AGTACCTGGGTGTTCCCCACCTTGGGCATCATGCACCACAACAAACAGGCCACTGAGAATGCAAAGGAGGAAGTGAGGCG
AATTCTGGGGCTGCTGGATGCTTACTTGAAGACGAGGACTTTTCTGGTGGGCGAACGAGTGACATTGGCTGACATCACAG
TTGTCTGCACCCTGTTGTGGCTCTATAAGCAGGTTCTGGAGCCTTCTTTCCGCCAGGCCTTTCCCAATACCAACCGCTGG
TTCCTCACCTGCATTAACCAGCCCCAGTTCCGGGCTGTCTTGGGGGAAGTGAAACTGTGTGAGAAGATGGCCCAGTTTGA
TGCTAAAAAGTTTGCAGAGACCCAACCTAAAAAGGACACACCACGGAAAGAGAAGGGTTCACGGGAAGAGAAGCAGAAGC
CCCAGGCTGAGCGGAAGGAGGAGAAAAAGGCGGCTGCCCCTGCTCCTGAGGAGGAGATGGATGAATGTGAGCAGGCGCTG
GCTGCTGAGCCCAAGGCCAAGGACCCCTTCGCTCACCTGCCCAAGAGTACCTTTGTGTTGGATGAATTTAAGCGCAAGTA
CTCCAATGAGGACACACTCTCTGTGGCACTGCCATATTTCTGGGAGCACTTTGATAAGGACGGCTGGTCCCTGTGGTACT
CAGAGTATCGCTTCCCTGAAGAACTCACTCAGACCTTCATGAGCTGCAATCTCATCACTGGAATGTTCCAGCGACTGGAC
AAGCTGAGGAAGAATGCCTTCGCCAGTGTCATCCTTTTTGGAACCAACAATAGCAGCTCCATTTCTGGAGTCTGGGTCTT
CCGAGGCCAGGAGCTTGCCTTTCCGCTGAGTCCAGATTGGCAGGTGGACTACGAGTCATACACATGGCGGAAACTGGATC
CTGGCAGCGAGGAGACCCAGACGCTGGTTCGAGAGTACTTTTCCTGGGAGGGGGCCTTCCAGCATGTGGGCAAAGCCTTC
AATCAGGGCAAGATCTTCAAGTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 195 .55 RPM
SRP007412_cerebellum 228 .07 RPM
SRP007412_heart 290 .06 RPM
SRP007412_kidney 641 .01 RPM
SRP007412_liver 271 .89 RPM
SRP007412_testis 237 .32 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006745 possible_ortholog 1 retrogene
retro_amel_772,
Bos taurus ENSBTAG00000011843 possible_ortholog 1 retrogene
retro_btau_1600,
Canis familiaris ENSCAFG00000015834 possible_ortholog 6 retrogenes
retro_cfam_1241, retro_cfam_1398, retro_cfam_1862, retro_cfam_478, retro_cfam_638, retro_cfam_653,
Callithrix jacchus ENSCJAG00000018949 possible_ortholog 6 retrogenes
retro_cjac_1464, retro_cjac_1770, retro_cjac_1942, retro_cjac_3147, retro_cjac_841, retro_cjac_874,
Equus caballus ENSECAG00000014334 possible_ortholog 1 retrogene
retro_ecab_419,
Erinaceus europaeus ENSEEUG00000001231 ortholog_one2many 1 retrogene
retro_eeur_575,
Homo sapiens ENSG00000254772 ortholog_one2one 4 retrogenes
retro_hsap_2778, retro_hsap_2982, retro_hsap_3906, retro_hsap_4744,
Latimeria chalumnae ENSLACG00000014700 ortholog_one2many 1 retrogene
retro_lcha_82,
Loxodonta africana ENSLAFG00000003339 ortholog_one2many 1 retrogene
retro_lafr_381,
Myotis lucifugus ENSMLUG00000000342 possible_ortholog 1 retrogene
retro_mluc_1110,
Macaca mulatta ENSMMUG00000006598 ortholog_one2many 5 retrogenes
retro_mmul_1447, retro_mmul_1905, retro_mmul_2528, retro_mmul_736, retro_mmul_802,
Monodelphis domestica ENSMODG00000007691 possible_ortholog 1 retrogene
retro_mdom_68,
Mustela putorius furo ENSMPUG00000013942 possible_ortholog 2 retrogenes
retro_mputfur_427, retro_mputfur_944,
Mus musculus ENSMUSG00000071644 ortholog_one2many 7 retrogenes
retro_mmus_1447, retro_mmus_1839, retro_mmus_2350, retro_mmus_2765, retro_mmus_3080, retro_mmus_425, retro_mmus_989,
Nomascus leucogenys ENSNLEG00000003528 ortholog_one2one 2 retrogenes
retro_nleu_1510, retro_nleu_681,
Oryctolagus cuniculus ENSOCUG00000020959 possible_ortholog 3 retrogenes
retro_ocun_1693, retro_ocun_369, retro_ocun_693,
Otolemur garnettii ENSOGAG00000000827 possible_ortholog 1 retrogene
retro_ogar_1344,
Ochotona princeps ENSOPRG00000014563 possible_ortholog 1 retrogene
retro_opri_814,
Pongo abelii ENSPPYG00000029434 possible_ortholog 5 retrogenes
retro_pabe_2237, retro_pabe_2378, retro_pabe_2409, retro_pabe_2473, retro_pabe_3690,
Pteropus vampyrus ENSPVAG00000003440 possible_ortholog 1 retrogene
retro_pvam_1239,
Rattus norvegicus ENSRNOG00000020075 ortholog_one2many 8 retrogenes
retro_rnor_1312, retro_rnor_2126, retro_rnor_2235, retro_rnor_2269, retro_rnor_2468, retro_rnor_2617, retro_rnor_2928, retro_rnor_979,
Sorex araneus ENSSARG00000011232 possible_ortholog 1 retrogene
retro_sara_718,
Sus scrofa ENSSSCG00000013064 possible_ortholog 1 retrogene
retro_sscr_164,
Ictidomys tridecemlineatus ENSSTOG00000002851 ortholog_one2many 2 retrogenes
retro_itri_852, retro_itri_886,
Tursiops truncatus ENSTTRG00000002459 possible_ortholog 3 retrogenes
retro_ttru_1082, retro_ttru_1544, retro_ttru_1603,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_1879 76.60 54.21
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2. retro_ptro_2017 80.07 57.29
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3. retro_ptro_3159 90.32 88.91
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Download FASTA sequences of all ENSPTRG00000003768 retrocopies