Parental gene:

RBM3, ENSPPYG00000020314

Aliases:None
Description:RNA binding motif (RNP1, RRM) protein 3 [Source:RefSeq peptide;Acc:NP_001124733]
Organism:Orangutan (Pongo abelii)
Coordinates:X:49363775..49367240(+)


>ENSPPYG00000020314
ATGTCCTCTGAAGAAGGAAAGCTCTTCGTGGGAGGGCTCAACTTTAACACCGACGAGCAGGCACTGGAAGACCACTTCAG
CAGTTTCGGACCTATCTCTGAGGTGGTCGTTGTCAAGGACCGGGAGACTCAGCGGTCCAGGGGTTTTGGTTTCATCACCT
TCACCAACCCAGAGCATGCTTCAGTTGCCATGAGAGCCATGAACGGAGAGTCTCTGGATGGTCGTCAGATCCGTGTGGAT
CATGCAGGCAAGTCTGCTCGGGGAACCAGAGGAGGTGGCTTTGGGGCCCATGGGCGTGGTCGCAGCTACTCTAGAGGTGG
TGGGGACCAGGGCTATGGGAGTGGCAGGTATTATGACAGTCGACCTGGAGGGTATGGATATGGATATGGACGTTCCAGAG
ACTATAATGGCAGAAACCAGGGTGGTTATGACCGCTACTCAGGAGGAAATTACAGAGACAATTATGACAACTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 14 .10 RPM
SRP007412_cerebellum 13 .50 RPM
SRP007412_heart 14 .81 RPM
SRP007412_kidney 26 .22 RPM
SRP007412_liver 19 .46 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000013718 ortholog_one2many 1 retrogene
retro_acar_197,
Ailuropoda melanoleuca ENSAMEG00000012653 ortholog_one2one 1 retrogene
retro_amel_519,
Bos taurus ENSBTAG00000025848 ortholog_one2many 1 retrogene
retro_btau_1144,
Canis familiaris ENSCAFG00000015485 ortholog_one2one 2 retrogenes
retro_cfam_1475, retro_cfam_259,
Cavia porcellus ENSCPOG00000003553 possible_ortholog 1 retrogene
retro_cpor_950,
Dasypus novemcinctus ENSDNOG00000010420 possible_ortholog 16 retrogenes
retro_dnov_1343, retro_dnov_1380, retro_dnov_1463, retro_dnov_151, retro_dnov_1718, retro_dnov_180, retro_dnov_2034, retro_dnov_2076, retro_dnov_212, retro_dnov_213, retro_dnov_2217, retro_dnov_2367, retro_dnov_2581, retro_dnov_733, retro_dnov_778, retro_dnov_974,
Dipodomys ordii ENSDORG00000000182 ortholog_one2one 1 retrogene
retro_dord_547,
Equus caballus ENSECAG00000024257 ortholog_one2one 2 retrogenes
retro_ecab_130, retro_ecab_589,
Homo sapiens ENSG00000102317 ortholog_one2one 1 retrogene
retro_hsap_265,
Gadus morhua ENSGMOG00000012137 ortholog_many2many 1 retrogene
retro_gmor_4,
Loxodonta africana ENSLAFG00000007003 ortholog_one2many 1 retrogene
retro_lafr_1091,
Myotis lucifugus ENSMLUG00000003996 ortholog_one2one 1 retrogene
retro_mluc_1013,
Mus musculus ENSMUSG00000031167 ortholog_one2one 4 retrogenes
retro_mmus_2044, retro_mmus_2963, retro_mmus_3019, retro_mmus_501,
Nomascus leucogenys ENSNLEG00000007841 ortholog_one2one 2 retrogenes
retro_nleu_2591, retro_nleu_867,
Pongo abelii ENSPPYG00000017728 within_species_paralog 1 retrogene
retro_pabe_324,
Pongo abelii ENSPPYG00000020771 within_species_paralog 3 retrogenes
retro_pabe_2548, retro_pabe_303, retro_pabe_766,
Pan troglodytes ENSPTRG00000021864 ortholog_one2one 1 retrogene
retro_ptro_222,
Pteropus vampyrus ENSPVAG00000015630 ortholog_one2one 1 retrogene
retro_pvam_953,
Sus scrofa ENSSSCG00000021591 ortholog_one2many 1 retrogene
retro_sscr_842,
Ictidomys tridecemlineatus ENSSTOG00000027493 ortholog_one2many 1 retrogene
retro_itri_142,
Tarsius syrichta ENSTSYG00000008670 ortholog_one2one 4 retrogenes
retro_tsyr_1733, retro_tsyr_197, retro_tsyr_2002, retro_tsyr_679,
Tursiops truncatus ENSTTRG00000008587 ortholog_one2one 3 retrogenes
retro_ttru_1898, retro_ttru_928, retro_ttru_938,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_40 79.07 54.78
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Download FASTA sequences of all ENSPPYG00000020314 retrocopies