Parental gene:

SUMO1, ENSPPYG00000013083

Aliases:None
Description:Small ubiquitin-related modifier 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5R6J4]
Organism:Orangutan (Pongo abelii)
Coordinates:2b:93560667..93594915(-)


>ENSPPYG00000013083
ATGGATCCAGGACCTGTGCTCCTGTGGGATGGCCCTAGTACTGATGCGCAGGACCTGGTCCTTGAAGGAGCTGACAAAAC
TGCCGTTCAGCCGCGCGACCACCGGCAAAACAGTTCCACAGCCTGCCCCTCCTCTTGGCTGCTCCCCCACCCATTTCCCG
CCTTGTCTTTCCTCTCTTCTCTCTCTCCCTCCTCCCTGCGCGAAGCGGAAGTGACGCGAGGCGTAGCGGAAGTTACTGCA
GCCGCGGTGTTGTGCTGTGGGGAAGGGAGAGGATTTGTAAACCCCGGAGCGAGGTTCTGCTTACCCGAGGCCGCTGCTGT
GCGGAGACCCCCGGGTGAAGCCACCGTCATCATGTCTGACCAGGAGGCAAAACCTTCAACTGAGGACTTGGGGGATAAGA
AGGAAGGTGAATATATTAAACTCAAAGTCATTGGACAGGATAGCAGTGAGATTCACTTCAAAGTGAAAATGACAACACAT
CTCAAGAAACTCAAAGAATCTTACTGTCAAAGACAGGGCGTTCCAATGAATTCACTCAGGTTTCTCTTTGAGGGTCAGAG
AATTGCTGATAATCATACTCCAAAAGAACTGGGAATGGAGGAAGAAGATGTGATTGAAGTTTATCAGGAACAAACGGGGG
GTCATTCAACAGTTTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 43 .85 RPM
SRP007412_cerebellum 39 .52 RPM
SRP007412_heart 16 .59 RPM
SRP007412_kidney 40 .24 RPM
SRP007412_liver 32 .87 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000013225 possible_ortholog 5 retrogenes
retro_amel_1068, retro_amel_233, retro_amel_236, retro_amel_315, retro_amel_49,
Bos taurus ENSBTAG00000009859 possible_ortholog 6 retrogenes
retro_btau_112, retro_btau_1512, retro_btau_1705, retro_btau_357, retro_btau_363, retro_btau_499,
Canis familiaris ENSCAFG00000012431 possible_ortholog 8 retrogenes
retro_cfam_1226, retro_cfam_1253, retro_cfam_139, retro_cfam_1815, retro_cfam_1912, retro_cfam_2048, retro_cfam_386, retro_cfam_985,
Choloepus hoffmanni ENSCHOG00000009739 possible_ortholog 2 retrogenes
retro_chof_190, retro_chof_2068,
Callithrix jacchus ENSCJAG00000004961 ortholog_one2many 3 retrogenes
retro_cjac_1686, retro_cjac_1932, retro_cjac_2610,
Cavia porcellus ENSCPOG00000012143 ortholog_one2many 1 retrogene
retro_cpor_1279,
Dasypus novemcinctus ENSDNOG00000015868 possible_ortholog 10 retrogenes
retro_dnov_1070, retro_dnov_1324, retro_dnov_1610, retro_dnov_1623, retro_dnov_1826, retro_dnov_1876, retro_dnov_2068, retro_dnov_2330, retro_dnov_2423, retro_dnov_997,
Equus caballus ENSECAG00000024693 ortholog_one2many 4 retrogenes
retro_ecab_199, retro_ecab_365, retro_ecab_570, retro_ecab_935,
Erinaceus europaeus ENSEEUG00000013161 possible_ortholog 6 retrogenes
retro_eeur_40, retro_eeur_404, retro_eeur_428, retro_eeur_644, retro_eeur_645, retro_eeur_651,
Felis catus ENSFCAG00000031005 possible_ortholog 6 retrogenes
retro_fcat_1520, retro_fcat_218, retro_fcat_26, retro_fcat_472, retro_fcat_6, retro_fcat_862,
Homo sapiens ENSG00000116030 possible_ortholog 5 retrogenes
retro_hsap_2007, retro_hsap_240, retro_hsap_2489, retro_hsap_262, retro_hsap_897,
Gorilla gorilla ENSGGOG00000026439 ortholog_one2one 5 retrogenes
retro_ggor_1451, retro_ggor_1550, retro_ggor_299, retro_ggor_311, retro_ggor_725,
Loxodonta africana ENSLAFG00000022855 possible_ortholog 5 retrogenes
retro_lafr_111, retro_lafr_1148, retro_lafr_189, retro_lafr_540, retro_lafr_951,
Microcebus murinus ENSMICG00000008968 possible_ortholog 5 retrogenes
retro_mmur_1177, retro_mmur_1300, retro_mmur_1493, retro_mmur_1554, retro_mmur_1602,
Myotis lucifugus ENSMLUG00000007504 possible_ortholog 2 retrogenes
retro_mluc_1346, retro_mluc_188,
Macaca mulatta ENSMMUG00000005240 possible_ortholog 7 retrogenes
retro_mmul_1108, retro_mmul_2035, retro_mmul_2081, retro_mmul_313, retro_mmul_373, retro_mmul_450, retro_mmul_855,
Mustela putorius furo ENSMPUG00000000335 ortholog_one2many 2 retrogenes
retro_mputfur_257, retro_mputfur_33,
Mus musculus ENSMUSG00000026021 ortholog_one2many 5 retrogenes
retro_mmus_1594, retro_mmus_2129, retro_mmus_2135, retro_mmus_252, retro_mmus_2962,
Nomascus leucogenys ENSNLEG00000006997 possible_ortholog 4 retrogenes
retro_nleu_277, retro_nleu_384, retro_nleu_855, retro_nleu_865,
Otolemur garnettii ENSOGAG00000030345 possible_ortholog 1 retrogene
retro_ogar_215,
Procavia capensis ENSPCAG00000006870 possible_ortholog 1 retrogene
retro_pcap_136,
Pongo abelii ENSPPYG00000029777 within_species_paralog 2 retrogenes
retro_pabe_164, retro_pabe_84,
Pan troglodytes ENSPTRG00000012817 ortholog_one2many 1 retrogene
retro_ptro_119,
Rattus norvegicus ENSRNOG00000016133 ortholog_one2many 2 retrogenes
retro_rnor_2015, retro_rnor_813,
Sorex araneus ENSSARG00000008205 possible_ortholog 8 retrogenes
retro_sara_130, retro_sara_429, retro_sara_433, retro_sara_456, retro_sara_487, retro_sara_679, retro_sara_758, retro_sara_763,
Sarcophilus harrisii ENSSHAG00000011968 ortholog_one2many 1 retrogene
retro_shar_375,
Ictidomys tridecemlineatus ENSSTOG00000025405 ortholog_one2many 4 retrogenes
retro_itri_1193, retro_itri_1232, retro_itri_216, retro_itri_668,
Tursiops truncatus ENSTTRG00000000642 ortholog_one2many 4 retrogenes
retro_ttru_1646, retro_ttru_1652, retro_ttru_309, retro_ttru_399,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_11 94.85 61.47
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2. retro_pabe_775 59.82 50.46
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3. retro_pabe_1830 81.56 63.76
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Download FASTA sequences of all ENSPPYG00000013083 retrocopies