Parental gene:

SUMO1, ENSDNOG00000015868

Aliases:None
Description:small ubiquitin-like modifier 1 [Source:HGNC Symbol;Acc:12502]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_4983:238803..287445(-)


>ENSDNOG00000015868
TGTGCTGTGGAGAAGAGAGACGGGTTTGTAAGCCCCAGAGCGAGGTTCTGCTTGCCCGTGGTCGCTGCTGTGCGGAGACC
CGGGGGTGAGGCCACCGTCACCATGTCTGATCAGGAGGCGAAACCTTCAACTGAGGACTTGGGGGATAAGAAAGAAGGGG
AATACATTAAACTGAAAGTCATTGGACAGGATAGCAGTGAGATTCACTTCAAGGTGAAAATGACAACACATCTCAAGAAA
CTCAAAGAATCATACTGTCAAAGACAGGGAGTTCCAATGAATTCACTCAGGTTTCTCTTTGAAGGTCAGAGAATTGCTGA
TAATCACACTCCAAAAGAA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 2 .33 RPM
SRP012922_cerebellum 2 .34 RPM
SRP012922_heart 0 .93 RPM
SRP012922_kidney 3 .29 RPM
SRP012922_liver 1 .39 RPM
SRP012922_lung 3 .36 RPM
SRP012922_quadricep_muscle 0 .69 RPM
SRP012922_spleen 2 .29 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000013225 ortholog_one2one 5 retrogenes
retro_amel_1068, retro_amel_233, retro_amel_236, retro_amel_315, retro_amel_49,
Bos taurus ENSBTAG00000009859 possible_ortholog 6 retrogenes
retro_btau_112, retro_btau_1512, retro_btau_1705, retro_btau_357, retro_btau_363, retro_btau_499,
Canis familiaris ENSCAFG00000012431 possible_ortholog 8 retrogenes
retro_cfam_1226, retro_cfam_1253, retro_cfam_139, retro_cfam_1815, retro_cfam_1912, retro_cfam_2048, retro_cfam_386, retro_cfam_985,
Felis catus ENSFCAG00000031005 possible_ortholog 6 retrogenes
retro_fcat_1520, retro_fcat_218, retro_fcat_26, retro_fcat_472, retro_fcat_6, retro_fcat_862,
Loxodonta africana ENSLAFG00000022855 possible_ortholog 5 retrogenes
retro_lafr_111, retro_lafr_1148, retro_lafr_189, retro_lafr_540, retro_lafr_951,
Myotis lucifugus ENSMLUG00000007504 possible_ortholog 2 retrogenes
retro_mluc_1346, retro_mluc_188,
Otolemur garnettii ENSOGAG00000030345 possible_ortholog 1 retrogene
retro_ogar_215,
Pongo abelii ENSPPYG00000013083 possible_ortholog 3 retrogenes
retro_pabe_11, retro_pabe_1830, retro_pabe_775,
Pan troglodytes ENSPTRG00000012817 possible_ortholog 1 retrogene
retro_ptro_119,
Sarcophilus harrisii ENSSHAG00000011968 ortholog_one2one 1 retrogene
retro_shar_375,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_997 80.77 68.14
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2. retro_dnov_1070 59.38 56.64
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3. retro_dnov_1324 61.29 53.98
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4. retro_dnov_1610 91.25 70.80
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5. retro_dnov_1623 60.00 56.64
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6. retro_dnov_1826 64.36 89.38
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7. retro_dnov_1876 63.75 69.91
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8. retro_dnov_2068 57.58 57.52
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9. retro_dnov_2330 99.08 96.46
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10. retro_dnov_2423 72.97 97.35
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Download FASTA sequences of all ENSDNOG00000015868 retrocopies