Parental gene:

SRP14, ENSPPYG00000006342

Aliases:None
Description:Signal recognition particle 14 kDa protein [Source:UniProtKB/Swiss-Prot;Acc:Q5RBX7]
Organism:Orangutan (Pongo abelii)
Coordinates:15:36401759..36407489(-)


>ENSPPYG00000006342
ATGGTGTTGTTGGAGAGCGAGCAGTTCCTGACGGAGCTGACCAGACTTTTCCAGAAGTGCCGGACGTCGGGCAGCGTCTA
TATCACCTTGAAGAAGTATGACGGTCGAACCAAACCCATTCCAAAGAAAGGTACTGTGGAGGGCTTTGAGCCCGCAGACA
ACAAGTGTCTGTTAAGAGCTACCGATGGGAAGAAGAAGATCAGCACTGTGGTGAGCTCCAAGGAAGTGAATAAGTTTCAG
ATGGCTTATTCAAACCTCCTGAGAGCTAACATGGATGGGCTGAAGAAGAGAGACAAAAAGAACAAAACTAAGAAGACCAA
AGCAGCAGCAGCAGCAGCAGCACCTGCCGCAGCAGCAACAGCAGCAACAACAGCAGCAACAGCAGCAACAGCAGCACAGT
AA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 0 .66 RPM
SRP007412_cerebellum 1 .34 RPM
SRP007412_heart 0 .27 RPM
SRP007412_kidney 0 .56 RPM
SRP007412_liver 0 .34 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017231 possible_ortholog 1 retrogene
retro_amel_1566,
Canis familiaris ENSCAFG00000029889 possible_ortholog 2 retrogenes
retro_cfam_210, retro_cfam_40,
Choloepus hoffmanni ENSCHOG00000005321 ortholog_one2many 2 retrogenes
retro_chof_212, retro_chof_2659,
Callithrix jacchus ENSCJAG00000020912 ortholog_one2one 3 retrogenes
retro_cjac_1642, retro_cjac_171, retro_cjac_3057,
Cavia porcellus ENSCPOG00000008994 ortholog_one2many 2 retrogenes
retro_cpor_1071, retro_cpor_462,
Dasypus novemcinctus ENSDNOG00000011147 ortholog_one2many 3 retrogenes
retro_dnov_1303, retro_dnov_2164, retro_dnov_2599,
Equus caballus ENSECAG00000000319 possible_ortholog 1 retrogene
retro_ecab_817,
Erinaceus europaeus ENSEEUG00000012759 possible_ortholog 1 retrogene
retro_eeur_357,
Echinops telfairi ENSETEG00000011870 ortholog_one2many 1 retrogene
retro_etel_1094,
Felis catus ENSFCAG00000030207 possible_ortholog 2 retrogenes
retro_fcat_1425, retro_fcat_1684,
Homo sapiens ENSG00000140319 ortholog_one2one 3 retrogenes
retro_hsap_1765, retro_hsap_811, retro_hsap_949,
Gorilla gorilla ENSGGOG00000009921 ortholog_one2one 1 retrogene
retro_ggor_665,
Microcebus murinus ENSMICG00000007637 possible_ortholog 1 retrogene
retro_mmur_487,
Myotis lucifugus ENSMLUG00000010531 possible_ortholog 5 retrogenes
retro_mluc_1489, retro_mluc_2284, retro_mluc_2545, retro_mluc_375, retro_mluc_384,
Macaca mulatta ENSMMUG00000016061 ortholog_one2one 4 retrogenes
retro_mmul_1228, retro_mmul_1740, retro_mmul_573, retro_mmul_780,
Monodelphis domestica ENSMODG00000029204 ortholog_one2many 1 retrogene
retro_mdom_1806,
Mustela putorius furo ENSMPUG00000008324 possible_ortholog 1 retrogene
retro_mputfur_376,
Nomascus leucogenys ENSNLEG00000002457 ortholog_one2one 2 retrogenes
retro_nleu_246, retro_nleu_2831,
Otolemur garnettii ENSOGAG00000029070 ortholog_many2many 2 retrogenes
retro_ogar_2839, retro_ogar_40,
Ochotona princeps ENSOPRG00000008599 possible_ortholog 1 retrogene
retro_opri_619,
Pan troglodytes ENSPTRG00000006911 ortholog_one2one 3 retrogenes
retro_ptro_1181, retro_ptro_564, retro_ptro_656,
Pteropus vampyrus ENSPVAG00000002186 possible_ortholog 2 retrogenes
retro_pvam_152, retro_pvam_323,
Rattus norvegicus ENSRNOG00000007512 possible_ortholog 1 retrogene
retro_rnor_2702,
Ictidomys tridecemlineatus ENSSTOG00000015627 possible_ortholog 9 retrogenes
retro_itri_1334, retro_itri_1501, retro_itri_1633, retro_itri_382, retro_itri_432, retro_itri_707, retro_itri_710, retro_itri_799, retro_itri_824,
Tupaia belangeri ENSTBEG00000016637 ortholog_one2many 1 retrogene
retro_tbel_196,
Tarsius syrichta ENSTSYG00000009467 ortholog_one2many 4 retrogenes
retro_tsyr_1283, retro_tsyr_1985, retro_tsyr_60, retro_tsyr_73,
Tursiops truncatus ENSTTRG00000000036 possible_ortholog 5 retrogenes
retro_ttru_1185, retro_ttru_1288, retro_ttru_594, retro_ttru_74, retro_ttru_782,
Vicugna pacos ENSVPAG00000010282 possible_ortholog 1 retrogene
retro_vpac_20,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_262 73.33 56.39
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2. retro_pabe_811 84.55 80.45
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3. retro_pabe_1534 85.45 82.71
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Download FASTA sequences of all ENSPPYG00000006342 retrocopies