Parental gene:

SRP14, ENSCPOG00000008994

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_10:25743943..25746717(-)


>ENSCPOG00000008994
ATGGTGCTGCTGGAGAGCGAGCAGTTCCTGACCGAGCTGACCAGGCTGTTCCAGAAGTGCCGGACGTCGGGCAGCGTCTT
CATCACCCTGAAGAAATATGATGGTCGAACTAGATCCATCCCAAAGAAGGGAACTGTGGAGGGTTTTGAGCCTTCAGATA
ACAAATGTCTCTTGAGAGCTACGGATGGGAAAAAGAAGATCAGCACTGTGGTGAGCTCCAAAGAAGTAAATAAGTTTCAG
ATGGCTTATTCAAACCTGTTGAGAGCTAACATGGATGGGCTGAAGAAGAGAGACAAAAAGAACAAAAATAAGAAGGCCAA
AACAGCACAGTGA

Library Parental gene expression (RPM)
SRP017611_brain 27 .21 RPM
SRP017611_kidney 27 .74 RPM
SRP017611_liver 18 .32 RPM
SRP040447_lung 25 .70 RPM
SRP040447_skeletal_muscle 28 .52 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000029889 possible_ortholog 2 retrogenes
retro_cfam_210, retro_cfam_40,
Choloepus hoffmanni ENSCHOG00000005321 ortholog_one2one 2 retrogenes
retro_chof_212, retro_chof_2659,
Callithrix jacchus ENSCJAG00000020912 ortholog_one2many 3 retrogenes
retro_cjac_1642, retro_cjac_171, retro_cjac_3057,
Dasypus novemcinctus ENSDNOG00000011147 ortholog_one2one 3 retrogenes
retro_dnov_1303, retro_dnov_2164, retro_dnov_2599,
Echinops telfairi ENSETEG00000011870 ortholog_one2one 1 retrogene
retro_etel_1094,
Homo sapiens ENSG00000140319 ortholog_one2one 3 retrogenes
retro_hsap_1765, retro_hsap_811, retro_hsap_949,
Gorilla gorilla ENSGGOG00000009921 ortholog_one2many 1 retrogene
retro_ggor_665,
Myotis lucifugus ENSMLUG00000010531 possible_ortholog 5 retrogenes
retro_mluc_1489, retro_mluc_2284, retro_mluc_2545, retro_mluc_375, retro_mluc_384,
Macaca mulatta ENSMMUG00000016061 ortholog_one2many 4 retrogenes
retro_mmul_1228, retro_mmul_1740, retro_mmul_573, retro_mmul_780,
Monodelphis domestica ENSMODG00000029204 ortholog_one2one 1 retrogene
retro_mdom_1806,
Mustela putorius furo ENSMPUG00000008324 possible_ortholog 1 retrogene
retro_mputfur_376,
Nomascus leucogenys ENSNLEG00000002457 ortholog_one2one 2 retrogenes
retro_nleu_246, retro_nleu_2831,
Otolemur garnettii ENSOGAG00000029070 ortholog_one2many 2 retrogenes
retro_ogar_2839, retro_ogar_40,
Pongo abelii ENSPPYG00000006342 ortholog_one2many 3 retrogenes
retro_pabe_1534, retro_pabe_262, retro_pabe_811,
Pan troglodytes ENSPTRG00000006911 ortholog_one2one 3 retrogenes
retro_ptro_1181, retro_ptro_564, retro_ptro_656,
Tupaia belangeri ENSTBEG00000016637 ortholog_one2one 1 retrogene
retro_tbel_196,
Tarsius syrichta ENSTSYG00000009467 ortholog_one2one 4 retrogenes
retro_tsyr_1283, retro_tsyr_1985, retro_tsyr_60, retro_tsyr_73,
Tursiops truncatus ENSTTRG00000000036 possible_ortholog 5 retrogenes
retro_ttru_1185, retro_ttru_1288, retro_ttru_594, retro_ttru_74, retro_ttru_782,
Vicugna pacos ENSVPAG00000010282 possible_ortholog 1 retrogene
retro_vpac_20,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_462 68.83 70.00
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2. retro_cpor_1071 64.60 100.00
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Download FASTA sequences of all ENSCPOG00000008994 retrocopies