Parental gene:

HSPA8, ENSOCUG00000015533

Aliases:None
Description:heat shock 70kDa protein 8 [Source:HGNC Symbol;Acc:5241]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:1:95031613..95034849(+)


>ENSOCUG00000015533
GCAATCATGTCTAAGGGACCCGCAGTCGGCATTGATCTTGGCACCACCTACTCGTGCGTGGGTGTCTTCCAGCACGGGAA
AGTGGAGATAATTGCCAATGATCAGGGCAACCGAACCACCCCAAGCTATGTCGCCTTCACTGACACCGAACGACTGATCG
GTGATGCTGCAAAGAATCAAGTTGCGATGAACCCCACCAACACGGTTTTTGATGCCAAGCGATTGATCGGACGCAGATTT
GATGATGCTGTCGTTCAATCCGACATGAAACATTGGCCCTTCATGGTGGTGAATGATGCCGGCAGACCCAAGGTGCAAGT
AGAGTACAAGGGAGAGACGAAAAGTTTCTACCCAGAGGAGGTGTCATCAATGGTTCTGACGAAGATGAAGGAAATTGCAG
AAGCATACCTGGGGAAGACTGTTACCAATGCTGTGGTCACAGTGCCAGCTTACTTCAATGACTCTCAGCGTCAAGCAACC
AAAGATGCTGGAACCATTGCTGGTCTCAATGTACTGAGAATTATCAATGAGCCAACTGCCGCTGCTATTGCTTATGGCTT
AGACAAAAAGGTTGGGGCTGAGAGAAATGTGCTGATTTTTGACCTGGGAGGTGGCACTTTTGATGTGTCCATCCTCACAA
TTGAAGATGGAATTTTTGAGGTCAAATCCACAGCTGGAGACACCCACTTAGGTGGAGAAGACTTCGACAACCGAATGGTC
AACCATTTTATTGCCGAGTTCAAGCGCAAGCATAAGAAGGACATCAGTGAGAACAAGAGAGCTGTCAGGCGTCTCCGCAC
AGCTTGTGAGCGAGCTAAACGTACCCTCTCTTCCAGCACCCAGGCCAGCATTGAGATAGATTCTCTGTATGAGGGAATCG
ACTTCTATACCTCCATCACCCGTGCTCGATTTGAAGAGTTGAATGCTGACCTTTTCCGTGGCACCCTGGACCCTGTCGAG
AAAGCCCTTCGAGATGCCAAGTTAGATAAGTCTCAGATCCATGATATTGTCCTGGTGGGTGGTTCTACTAGAATTCCCAA
GATTCAGAAGCTGCTTCAAGACTTCTTCAATGGAAAAGAACTGAATAAGAGCATCAACCCTGATGAGGCTGTTGCCTATG
GTGCAGCTGTCCAGGCAGCCATCCTGTCTGGAGACAAATCTGAGAATGTTCAAGATCTGTTGCTGTTGGATGTCACTCCT
CTATCACTTGGGATTGAAACTGCTGGTGGAGTCATGACTGTCCTCATCAAGCGCAATACTACCATCCCTACCAAGCAGAC
ACAGACCTTCACCACCTACTCCGACAACCAGCCTGGCGTGCTCATTCAGGTTTATGAAGGTGAGCGTGCCATGACCAAGG
ATAACAATCTGCTCGGCAAGTTTGAGCTCACAGGCATACCTCCTGCACCCCGTGGTGTTCCTCAGATCGAAGTCACATTT
GATATTGATGCCAATGGCATTCTTAATGTATCTGCTGTGGATAAGAGTACAGGAAAAGAGAACAAGATCACCATTACTAA
CGACAAGGGCCGTTTGAGCAAGGAAGACATTGAGCGTATGGTCCAGGAAGCTGAGAAGTATAAGGCTGAAGATGAGAAGC
AGAGGGACAAGGTGTCTTCCAAGAATTCACTTGAGTCCTATGCATTCAACATGAAGGCAACTGTTGAAGATGAAAAACTT
CAAGGCAAGATTAATGACGAGGATAAACAGAAGATTCTTGACAAATGCAACGAAATCATCAACTGGCTGGATAAGAACCA
GACTGCAGAAAAGGAAGAATTTGAACATCAGCAGAAAGAACTGGAGAAAGTCTGCAACCCAATCATCACCAAGCTGTACC
AGAGTGCAGGGGGCATGCCAGGGGGCATGCCTGGGGGCTTCCCTGGTGGGGGAGCTCCTCCATCTGGTGGTGCTTCCTCA
GGGCCCACCATTGAAGAGGTTGATTAA

Library Parental gene expression (RPM)
SRP017611_brain 730 .91 RPM
SRP017611_kidney 544 .39 RPM
SRP017611_liver 185 .37 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000004884 ortholog_one2one 2 retrogenes
retro_acar_21, retro_acar_6,
Ailuropoda melanoleuca ENSAMEG00000008425 ortholog_one2one 1 retrogene
retro_amel_126,
Anas platyrhynchos ENSAPLG00000010667 ortholog_one2one 1 retrogene
retro_apla_6,
Bos taurus ENSBTAG00000013162 ortholog_one2one 1 retrogene
retro_btau_354,
Canis familiaris ENSCAFG00000011666 possible_ortholog 3 retrogenes
retro_cfam_140, retro_cfam_191, retro_cfam_509,
Ciona intestinalis ENSCING00000009665 ortholog_one2many 1 retrogene
retro_cint_12,
Callithrix jacchus ENSCJAG00000007648 ortholog_one2one 5 retrogenes
retro_cjac_2388, retro_cjac_3306, retro_cjac_3898, retro_cjac_4057, retro_cjac_721,
Cavia porcellus ENSCPOG00000004169 possible_ortholog 3 retrogenes
retro_cpor_1072, retro_cpor_619, retro_cpor_938,
Ciona savignyi ENSCSAVG00000008588 ortholog_many2many 1 retrogene
retro_csav_3,
Echinops telfairi ENSETEG00000010996 ortholog_one2one 1 retrogene
retro_etel_43,
Ficedula albicollis ENSFALG00000005812 ortholog_one2one 1 retrogene
retro_falb_18,
Felis catus ENSFCAG00000001132 ortholog_one2one 6 retrogenes
retro_fcat_132, retro_fcat_1331, retro_fcat_1571, retro_fcat_1775, retro_fcat_556, retro_fcat_79,
Gallus gallus ENSGALG00000006512 ortholog_one2one 1 retrogene
retro_ggal_8,
Gorilla gorilla ENSGGOG00000008381 ortholog_one2one 8 retrogenes
retro_ggor_1053, retro_ggor_1810, retro_ggor_1888, retro_ggor_1918, retro_ggor_2501, retro_ggor_3054, retro_ggor_3057, retro_ggor_360,
Loxodonta africana ENSLAFG00000030312 ortholog_one2one 4 retrogenes
retro_lafr_1218, retro_lafr_391, retro_lafr_790, retro_lafr_797,
Meleagris gallopavo ENSMGAG00000001929 ortholog_one2one 1 retrogene
retro_mgal_9,
Myotis lucifugus ENSMLUG00000004834 ortholog_one2one 3 retrogenes
retro_mluc_1800, retro_mluc_2300, retro_mluc_777,
Monodelphis domestica ENSMODG00000012958 ortholog_one2many 2 retrogenes
retro_mdom_127, retro_mdom_99,
Mustela putorius furo ENSMPUG00000005810 possible_ortholog 9 retrogenes
retro_mputfur_1048, retro_mputfur_1056, retro_mputfur_1144, retro_mputfur_131, retro_mputfur_188, retro_mputfur_309, retro_mputfur_627, retro_mputfur_694, retro_mputfur_958,
Mus musculus ENSMUSG00000015656 ortholog_one2one 8 retrogenes
retro_mmus_2244, retro_mmus_2584, retro_mmus_26, retro_mmus_2621, retro_mmus_2840, retro_mmus_316, retro_mmus_351, retro_mmus_620,
Oreochromis niloticus ENSONIG00000004759 ortholog_one2many 1 retrogene
retro_onil_2,
Pongo abelii ENSPPYG00000003987 ortholog_one2one 9 retrogenes
retro_pabe_183, retro_pabe_2193, retro_pabe_2254, retro_pabe_2260, retro_pabe_2261, retro_pabe_3153, retro_pabe_355, retro_pabe_3804, retro_pabe_3808,
Pelodiscus sinensis ENSPSIG00000012450 ortholog_one2one 2 retrogenes
retro_psin_17, retro_psin_5,
Taeniopygia guttata ENSTGUG00000000491 ortholog_one2one 1 retrogene
retro_tgut_7,
Takifugu rubripes ENSTRUG00000005265 ortholog_one2one 1 retrogene
retro_trub_30,
Tursiops truncatus ENSTTRG00000011139 ortholog_one2one 6 retrogenes
retro_ttru_1507, retro_ttru_1650, retro_ttru_1696, retro_ttru_35, retro_ttru_741, retro_ttru_808,
Xiphophorus maculatus ENSXMAG00000001602 ortholog_one2many 1 retrogene
retro_xmac_20,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_53 86.08 97.22
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2. retro_ocun_584 96.04 74.07
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3. retro_ocun_753 97.69 100.00
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4. retro_ocun_1308 94.44 55.56
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Download FASTA sequences of all ENSOCUG00000015533 retrocopies