Common name: Vase tunicate
Latin name: Ciona intestinalis
Genome assembly: KH
All retrocopies: 32
Parental genes: 29

Summary: Number of retrocopies :
Conserved ORF: 29 ORF 3 ORF
Expressed retrocopies (EST): 9 EST 23 EST

# RetrogeneDB ID Identity Coverage ORF conservation Expression evidence
1. retro_cint_1 55.46 % 99.73 % ORF EST
2. retro_cint_2 60.17 % 89.72 % ORF EST
3. retro_cint_3 94.48 % 98.79 % ORF EST
4. retro_cint_4 64.56 % 95.90 % ORF EST
5. retro_cint_5 55.39 % 55.89 % ORF EST
6. retro_cint_6 76.67 % 93.08 % ORF EST
7. retro_cint_7 69.73 % 56.17 % ORF EST
8. retro_cint_8 65.82 % 99.49 % ORF EST
9. retro_cint_9 51.77 % 99.12 % ORF EST
10. retro_cint_10 56.42 % 98.35 % ORF EST
11. retro_cint_11 59.41 % 99.67 % ORF EST
12. retro_cint_12 67.68 % 93.98 % ORF EST
13. retro_cint_13 51.25 % 56.55 % ORF EST
14. retro_cint_14 62.43 % 99.72 % ORF EST
15. retro_cint_15 51.07 % 90.59 % ORF EST
16. retro_cint_16 59.09 % 99.59 % ORF EST
17. retro_cint_17 64.49 % 72.56 % ORF EST
18. retro_cint_18 59.19 % 97.52 % ORF EST
19. retro_cint_19 63.27 % 98.65 % ORF EST
20. retro_cint_20 60.32 % 97.83 % ORF EST
21. retro_cint_21 54.94 % 80.20 % ORF EST
22. retro_cint_23 52.24 % 55.38 % ORF EST
23. retro_cint_25 56.41 % 100.00 % ORF EST
24. retro_cint_27 92.82 % 99.73 % ORF EST
25. retro_cint_28 50.17 % 99.29 % ORF EST
26. retro_cint_29 70.95 % 98.65 % ORF EST
27. retro_cint_30 77.15 % 98.67 % ORF EST
28. retro_cint_31 56.29 % 87.89 % ORF EST
29. retro_cint_32 60.00 % 52.08 % ORF EST
30. retro_cint_33 92.74 % 98.01 % ORF EST
31. retro_cint_34 77.06 % 99.08 % ORF EST
32. retro_cint_35 52.00 % 52.08 % ORF EST
# Ensembl ID Symbol Description
1. ENSCING00000023163
2. ENSCING00000002368
3. ENSCING00000018711 CIN.22448
4. ENSCING00000003305
5. ENSCING00000004542 Serine/threonine-protein phosphatase [Source:UniProtKB/TrEMBL;Acc:F6Y1K6]
6. ENSCING00000003195 RHYSIN2/DELTEX3-C Rhysin2/Deltex3-c protein [Source:RefSeq peptide;Acc:NP_001071963]
7. ENSCING00000004383
8. ENSCING00000009313 JNK c-jun N-terminal kinase [Source:RefSeq peptide;Acc:NP_001071750]
9. ENSCING00000006307
10. ENSCING00000021861
11. ENSCING00000005532
12. ENSCING00000004062
13. ENSCING00000002649 CIN.21501 Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:F6YDI9]
14. ENSCING00000003002 CI-PER-LIKE peroxiredoxin-like [Source:RefSeq peptide;Acc:NP_001027810]
15. ENSCING00000003959
16. ENSCING00000005707
17. ENSCING00000006860
18. ENSCING00000023856 CI14-3-3
19. ENSCING00000009936
20. ENSCING00000000485
21. ENSCING00000000626
22. ENSCING00000009665
23. ENSCING00000021790
24. ENSCING00000005258
25. ENSCING00000005305 CIGI1 G protein alpha subunit Gi [Source:RefSeq peptide;Acc:NP_001027619]
26. ENSCING00000012473
27. ENSCING00000007560
28. ENSCING00000007141 CKM creatine kinase [Source:RefSeq peptide;Acc:NP_001027661]
29. ENSCING00000003072
Retrogenes FASTA BED
TSV (download all or selected columns from MySQL table)
Parental genes FASTA BED
TSV (download all or selected columns from MySQL table)