RetrogeneDB - Parental gene ENSCJAG00000013067 details

                            
>ENSCJAG00000013067
ATGGGCAAGTTCATGAAACCTGGGAAGGTGGTGCTTGTCCTGGCTGGACGCTACTCTGGACGCAAAGCTGTCATCGTGAA

GAACATTGATGATGGCACCTCAGATCGCCCCTACAGCCATGCTTTGGTGGCTGGAATTGACCGCTATCCCCGAAAAGTGA

CAGCTGCCATGGGCAAGAAGAAGATCGCCAAGAGGTCAAAGATCAAGTCTTTTGTCAAAGTTTATAACTACAATCACCTG

ATGCCCACAAGGTACTCTGTTGACATCCCCTTGGACAAAACTGTCGTCAATAAGGATGTCTTCAGAGATCCTGCCCTTAA

ACGCAAAGCCCGACGAGAGGCCAAGGTCAAGTTTGAGGAGAGATACAAGACAGGCAAGAACAAGTGGTTCTTCCAGAAGC

TGCGGTTTTAG

Library	Parental gene expression (RPM)
SRP051959_colon	61 .04 RPM
SRP051959_heart	65 .48 RPM
SRP051959_kidney	69 .71 RPM
SRP051959_liver	90 .30 RPM
SRP051959_lung	77 .11 RPM
SRP051959_lymph_node	133 .24 RPM
SRP051959_skeletal_muscle	98 .23 RPM
SRP051959_spleen	107 .04 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000000200	possible_ortholog	3 retrogenes	retro_amel_122, retro_amel_37, retro_amel_674,
Bos taurus	ENSBTAG00000017441	possible_ortholog	6 retrogenes	retro_btau_1113, retro_btau_129, retro_btau_1565, retro_btau_1855, retro_btau_338, retro_btau_394,
Canis familiaris	ENSCAFG00000014630	possible_ortholog	6 retrogenes	retro_cfam_1193, retro_cfam_2109, retro_cfam_339, retro_cfam_364, retro_cfam_947, retro_cfam_959,
Cavia porcellus	ENSCPOG00000027359	possible_ortholog	3 retrogenes	retro_cpor_1178, retro_cpor_677, retro_cpor_715,
Dipodomys ordii	ENSDORG00000010907	possible_ortholog	6 retrogenes	retro_dord_154, retro_dord_335, retro_dord_477, retro_dord_527, retro_dord_601, retro_dord_784,
Equus caballus	ENSECAG00000007500	possible_ortholog	1 retrogene	retro_ecab_132,
Echinops telfairi	ENSETEG00000002811	possible_ortholog	23 retrogenes	retro_etel_1230, retro_etel_1250, retro_etel_1302, retro_etel_1312, retro_etel_1453, retro_etel_1496, retro_etel_160, retro_etel_177, retro_etel_2055, retro_etel_2170, retro_etel_278, retro_etel_306, retro_etel_349, retro_etel_415, retro_etel_461, retro_etel_467, retro_etel_548, retro_etel_555, retro_etel_751, retro_etel_753, retro_etel_775, retro_etel_805, retro_etel_971,
Felis catus	ENSFCAG00000013142	possible_ortholog	6 retrogenes	retro_fcat_1026, retro_fcat_1184, retro_fcat_1824, retro_fcat_228, retro_fcat_698, retro_fcat_78,
Homo sapiens	ENSG00000131469	ortholog_one2many	6 retrogenes	retro_hsap_1161, retro_hsap_1312, retro_hsap_2112, retro_hsap_2204, retro_hsap_238, retro_hsap_3787,
Gorilla gorilla	ENSGGOG00000026039	ortholog_one2many	6 retrogenes	retro_ggor_1741, retro_ggor_1852, retro_ggor_2546, retro_ggor_2630, retro_ggor_298, retro_ggor_907,
Loxodonta africana	ENSLAFG00000014220	possible_ortholog	3 retrogenes	retro_lafr_443, retro_lafr_739, retro_lafr_965,
Microcebus murinus	ENSMICG00000014214	ortholog_one2many	5 retrogenes	retro_mmur_1340, retro_mmur_1498, retro_mmur_1542, retro_mmur_673, retro_mmur_695,
Myotis lucifugus	ENSMLUG00000004119	ortholog_many2many	1 retrogene	retro_mluc_359,
Macaca mulatta	ENSMMUG00000008090	ortholog_many2many	7 retrogenes	retro_mmul_1646, retro_mmul_1997, retro_mmul_418, retro_mmul_478, retro_mmul_52, retro_mmul_680, retro_mmul_925,
Monodelphis domestica	ENSMODG00000015128	ortholog_one2many	1 retrogene	retro_mdom_1141,
Mustela putorius furo	ENSMPUG00000009913	possible_ortholog	11 retrogenes	retro_mputfur_1041, retro_mputfur_1108, retro_mputfur_1182, retro_mputfur_1307, retro_mputfur_1530, retro_mputfur_303, retro_mputfur_413, retro_mputfur_595, retro_mputfur_675, retro_mputfur_735, retro_mputfur_980,
Mus musculus	ENSMUSG00000063316	possible_ortholog	2 retrogenes	retro_mmus_223, retro_mmus_277,
Nomascus leucogenys	ENSNLEG00000011901	ortholog_many2many	2 retrogenes	retro_nleu_334, retro_nleu_45,
Oryctolagus cuniculus	ENSOCUG00000003872	ortholog_many2many	1 retrogene	retro_ocun_263,
Otolemur garnettii	ENSOGAG00000003940	ortholog_one2many	14 retrogenes	retro_ogar_1091, retro_ogar_1297, retro_ogar_1478, retro_ogar_1692, retro_ogar_1887, retro_ogar_2189, retro_ogar_2354, retro_ogar_2625, retro_ogar_2687, retro_ogar_2915, retro_ogar_3207, retro_ogar_3294, retro_ogar_3381, retro_ogar_618,
Procavia capensis	ENSPCAG00000013249	possible_ortholog	4 retrogenes	retro_pcap_123, retro_pcap_146, retro_pcap_203, retro_pcap_227,
Pan troglodytes	ENSPTRG00000009232	ortholog_one2many	6 retrogenes	retro_ptro_127, retro_ptro_1673, retro_ptro_208, retro_ptro_2569, retro_ptro_794, retro_ptro_900,
Pteropus vampyrus	ENSPVAG00000008817	ortholog_one2many	4 retrogenes	retro_pvam_1084, retro_pvam_1231, retro_pvam_25, retro_pvam_509,
Rattus norvegicus	ENSRNOG00000020674	possible_ortholog	8 retrogenes	retro_rnor_1150, retro_rnor_125, retro_rnor_1257, retro_rnor_1968, retro_rnor_2594, retro_rnor_2989, retro_rnor_386, retro_rnor_414,
Sorex araneus	ENSSARG00000011131	possible_ortholog	10 retrogenes	retro_sara_254, retro_sara_292, retro_sara_493, retro_sara_498, retro_sara_547, retro_sara_611, retro_sara_62, retro_sara_672, retro_sara_685, retro_sara_696,
Sarcophilus harrisii	ENSSHAG00000012042	ortholog_many2many	4 retrogenes	retro_shar_10, retro_shar_253, retro_shar_730, retro_shar_741,
Sus scrofa	ENSSSCG00000025507	possible_ortholog	5 retrogenes	retro_sscr_109, retro_sscr_1154, retro_sscr_576, retro_sscr_683, retro_sscr_943,
Ictidomys tridecemlineatus	ENSSTOG00000020555	possible_ortholog	5 retrogenes	retro_itri_1295, retro_itri_1812, retro_itri_283, retro_itri_836, retro_itri_926,
Tarsius syrichta	ENSTSYG00000003167	ortholog_one2many	12 retrogenes	retro_tsyr_1032, retro_tsyr_1154, retro_tsyr_1711, retro_tsyr_2036, retro_tsyr_381, retro_tsyr_476, retro_tsyr_602, retro_tsyr_787, retro_tsyr_816, retro_tsyr_822, retro_tsyr_95, retro_tsyr_989,
Tursiops truncatus	ENSTTRG00000011739	possible_ortholog	2 retrogenes	retro_ttru_1049, retro_ttru_1535,
Vicugna pacos	ENSVPAG00000002574	possible_ortholog	1 retrogene	retro_vpac_324,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_cjac_275	97.79	100.00	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_cjac_369	83.21	96.32	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_cjac_776	77.54	100.00	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_cjac_1345	84.67	100.00	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_cjac_1350	86.76	100.00	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_cjac_1543	80.67	86.76	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_cjac_1630	63.43	93.38	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_cjac_2210	83.94	100.00	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_cjac_2828	72.81	82.35	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSCJAG00000013067 retrocopies

Parental gene:	ENSCJAG00000013067
Aliases:	None
Description:	60S ribosomal protein L27 [Source:UniProtKB/TrEMBL;Acc:F7I424]
Organism:	*Marmoset (Callithrix jacchus)*
Coordinates:	5:75475671..75479282(+)

Parental gene:

ENSCJAG00000013067