Parental gene:

RPL27, ENSTSYG00000003167

Aliases:None
Description:ribosomal protein L27 [Source:HGNC Symbol;Acc:10328]
Organism:Tarsier (Tarsius syrichta)
Coordinates:scaffold_92426:2614..4689(-)


>ENSTSYG00000003167
AACATTGATGATGGCACCTCAGACCGCCCCTACAGCCATGCCCTTGTGGCTGGAATTGACCGCTATCCCCGCAAAGTGAC
AGCTGCGATGGGCAAGAAGAAGATTGCCAAGAGGTCAAAGATCAAATCTTTTGTGAAAGTTTATAACTACAATCACCTCA
TGCCCACAAGGTACTCTGTGGATATCCCCTTGGACAAAACCGTTGTCAACAAGGATGTCTTCAGAGACCCTGCTCTTAAA
CGCAAGGCCCGACGTGAAGCCAAGGTCAAGTTCGAAGAGAGGTACAAGACGGGCAAGAACAAGTGGTTCTTCCAGAAGCT
GCGGTTTTAG

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000200 possible_ortholog 3 retrogenes
retro_amel_122, retro_amel_37, retro_amel_674,
Bos taurus ENSBTAG00000017441 possible_ortholog 6 retrogenes
retro_btau_1113, retro_btau_129, retro_btau_1565, retro_btau_1855, retro_btau_338, retro_btau_394,
Canis familiaris ENSCAFG00000014630 possible_ortholog 6 retrogenes
retro_cfam_1193, retro_cfam_2109, retro_cfam_339, retro_cfam_364, retro_cfam_947, retro_cfam_959,
Callithrix jacchus ENSCJAG00000013067 ortholog_one2many 9 retrogenes
retro_cjac_1345, retro_cjac_1350, retro_cjac_1543, retro_cjac_1630, retro_cjac_2210, retro_cjac_275, retro_cjac_2828, retro_cjac_369, retro_cjac_776,
Felis catus ENSFCAG00000013142 possible_ortholog 6 retrogenes
retro_fcat_1026, retro_fcat_1184, retro_fcat_1824, retro_fcat_228, retro_fcat_698, retro_fcat_78,
Homo sapiens ENSG00000131469 ortholog_one2one 6 retrogenes
retro_hsap_1161, retro_hsap_1312, retro_hsap_2112, retro_hsap_2204, retro_hsap_238, retro_hsap_3787,
Gorilla gorilla ENSGGOG00000026039 ortholog_one2one 6 retrogenes
retro_ggor_1741, retro_ggor_1852, retro_ggor_2546, retro_ggor_2630, retro_ggor_298, retro_ggor_907,
Loxodonta africana ENSLAFG00000014220 possible_ortholog 3 retrogenes
retro_lafr_443, retro_lafr_739, retro_lafr_965,
Microcebus murinus ENSMICG00000014214 ortholog_one2one 5 retrogenes
retro_mmur_1340, retro_mmur_1498, retro_mmur_1542, retro_mmur_673, retro_mmur_695,
Myotis lucifugus ENSMLUG00000004119 ortholog_one2many 1 retrogene
retro_mluc_359,
Macaca mulatta ENSMMUG00000008090 ortholog_one2many 7 retrogenes
retro_mmul_1646, retro_mmul_1997, retro_mmul_418, retro_mmul_478, retro_mmul_52, retro_mmul_680, retro_mmul_925,
Monodelphis domestica ENSMODG00000015128 ortholog_one2one 1 retrogene
retro_mdom_1141,
Mus musculus ENSMUSG00000063316 possible_ortholog 2 retrogenes
retro_mmus_223, retro_mmus_277,
Nomascus leucogenys ENSNLEG00000011901 ortholog_one2many 2 retrogenes
retro_nleu_334, retro_nleu_45,
Oryctolagus cuniculus ENSOCUG00000003872 ortholog_one2many 1 retrogene
retro_ocun_263,
Otolemur garnettii ENSOGAG00000003940 ortholog_one2one 14 retrogenes
retro_ogar_1091, retro_ogar_1297, retro_ogar_1478, retro_ogar_1692, retro_ogar_1887, retro_ogar_2189, retro_ogar_2354, retro_ogar_2625, retro_ogar_2687, retro_ogar_2915, retro_ogar_3207, retro_ogar_3294, retro_ogar_3381, retro_ogar_618,
Pan troglodytes ENSPTRG00000009232 ortholog_one2one 6 retrogenes
retro_ptro_127, retro_ptro_1673, retro_ptro_208, retro_ptro_2569, retro_ptro_794, retro_ptro_900,
Pteropus vampyrus ENSPVAG00000008817 ortholog_one2one 4 retrogenes
retro_pvam_1084, retro_pvam_1231, retro_pvam_25, retro_pvam_509,
Rattus norvegicus ENSRNOG00000020674 possible_ortholog 8 retrogenes
retro_rnor_1150, retro_rnor_125, retro_rnor_1257, retro_rnor_1968, retro_rnor_2594, retro_rnor_2989, retro_rnor_386, retro_rnor_414,
Sarcophilus harrisii ENSSHAG00000012042 ortholog_one2many 4 retrogenes
retro_shar_10, retro_shar_253, retro_shar_730, retro_shar_741,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_tsyr_95 82.57 98.17
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2. retro_tsyr_381 85.45 100.00
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3. retro_tsyr_476 81.82 68.81
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4. retro_tsyr_602 82.35 77.98
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5. retro_tsyr_787 92.38 96.33
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6. retro_tsyr_816 72.22 98.17
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7. retro_tsyr_822 81.82 68.81
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8. retro_tsyr_989 99.08 100.00
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9. retro_tsyr_1032 77.06 98.17
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10. retro_tsyr_1154 76.92 59.63
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11. retro_tsyr_1711 78.46 59.63
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12. retro_tsyr_2036 90.09 100.00
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Download FASTA sequences of all ENSTSYG00000003167 retrocopies