Parental gene:

ENSCAFG00000028485

Aliases:None
Description:None
Organism:Dog (Canis familiaris)
Coordinates:1:112416500..112426855(-)


>ENSCAFG00000028485
ATGCTTGCTCTTTTTTTCTTCCAGATGCCTGGAGTTACTGTAAAAGACGTGAACCAGCAGGAGTTCGTCAGAGCTCTGGC
AGCCTTCCTCAAAAAGTCTGGGAAGCTGAAAGTCCCTGAATGGGTGGACACTGTCAAGCTGGCCAAGCATAAAGAGCTTG
CTCCCTACGATGAGAACTGGTTCTACACGCGAGCTGCTTCCACAGCACGGCACCTGTACCTCCGGGGCGGCGCTGGGGTC
GGCTCCATGACTAAGATCTACGGGGGACGTCAGAGAAACGGGGTCATGCCCAGCCACTTCAGCAGAGGCTCCAAGAGCGT
GGCCCGCAGGGTCCTCCAAGCCCTAGAGGGGCTGAAAATGGTGGAAAAGGACCAAGATGGGGGCCGCAAACTGACACCTC
AGGGACAGCGGGATCTGGACAGAATCGCCGGACAGGTGGCAGCTGCCAACAAGAAGCATTAG

Library Parental gene expression (RPM)
SRP012049_cerebellum 249 .56 RPM
SRP017611_brain 51 .76 RPM
SRP017611_kidney 475 .53 RPM
SRP017611_liver 105 .07 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004456 ortholog_one2one 4 retrogenes
retro_amel_1418, retro_amel_1816, retro_amel_193, retro_amel_550,
Bos taurus ENSBTAG00000011963 possible_ortholog 2 retrogenes
retro_btau_722, retro_btau_77,
Callithrix jacchus ENSCJAG00000020243 possible_ortholog 5 retrogenes
retro_cjac_1968, retro_cjac_2004, retro_cjac_2094, retro_cjac_2324, retro_cjac_3,
Cavia porcellus ENSCPOG00000025140 ortholog_one2one 1 retrogene
retro_cpor_1018,
Dasypus novemcinctus ENSDNOG00000002376 possible_ortholog 4 retrogenes
retro_dnov_1084, retro_dnov_1124, retro_dnov_1838, retro_dnov_2456,
Equus caballus ENSECAG00000009738 possible_ortholog 2 retrogenes
retro_ecab_263, retro_ecab_815,
Erinaceus europaeus ENSEEUG00000013614 possible_ortholog 4 retrogenes
retro_eeur_252, retro_eeur_259, retro_eeur_318, retro_eeur_385,
Felis catus ENSFCAG00000008125 ortholog_one2one 3 retrogenes
retro_fcat_2026, retro_fcat_543, retro_fcat_816,
Homo sapiens ENSG00000105372 possible_ortholog 5 retrogenes
retro_hsap_1400, retro_hsap_2417, retro_hsap_3174, retro_hsap_3642, retro_hsap_667,
Gorilla gorilla ENSGGOG00000015279 ortholog_one2one 4 retrogenes
retro_ggor_1085, retro_ggor_1503, retro_ggor_2458, retro_ggor_578,
Microcebus murinus ENSMICG00000004554 possible_ortholog 1 retrogene
retro_mmur_1480,
Myotis lucifugus ENSMLUG00000006143 ortholog_one2one 5 retrogenes
retro_mluc_1316, retro_mluc_2247, retro_mluc_2426, retro_mluc_980, retro_mluc_987,
Macaca mulatta ENSMMUG00000013429 possible_ortholog 8 retrogenes
retro_mmul_1201, retro_mmul_1358, retro_mmul_1807, retro_mmul_2007, retro_mmul_2443, retro_mmul_404, retro_mmul_607, retro_mmul_691,
Monodelphis domestica ENSMODG00000010067 possible_ortholog 3 retrogenes
retro_mdom_1531, retro_mdom_1888, retro_mdom_883,
Mustela putorius furo ENSMPUG00000007164 possible_ortholog 4 retrogenes
retro_mputfur_1071, retro_mputfur_1148, retro_mputfur_1470, retro_mputfur_1503,
Mus musculus ENSMUSG00000040952 possible_ortholog 15 retrogenes
retro_mmus_1206, retro_mmus_1207, retro_mmus_1528, retro_mmus_1711, retro_mmus_1713, retro_mmus_2095, retro_mmus_2295, retro_mmus_2535, retro_mmus_2850, retro_mmus_3337, retro_mmus_3499, retro_mmus_639, retro_mmus_643, retro_mmus_684, retro_mmus_899,
Otolemur garnettii ENSOGAG00000026255 possible_ortholog 3 retrogenes
retro_ogar_1315, retro_ogar_1663, retro_ogar_2305,
Pongo abelii ENSPPYG00000010029 ortholog_one2one 7 retrogenes
retro_pabe_1158, retro_pabe_1754, retro_pabe_1781, retro_pabe_2636, retro_pabe_430, retro_pabe_585, retro_pabe_586,
Pan troglodytes ENSPTRG00000011037 ortholog_one2one 6 retrogenes
retro_ptro_1392, retro_ptro_2269, retro_ptro_2467, retro_ptro_485, retro_ptro_612, retro_ptro_961,
Pteropus vampyrus ENSPVAG00000008980 ortholog_one2one 4 retrogenes
retro_pvam_1032, retro_pvam_1171, retro_pvam_137, retro_pvam_895,
Rattus norvegicus ENSRNOG00000048199 possible_ortholog 3 retrogenes
retro_rnor_221, retro_rnor_299, retro_rnor_51,
Sarcophilus harrisii ENSSHAG00000006831 ortholog_one2one 1 retrogene
retro_shar_731,
Sus scrofa ENSSSCG00000003042 ortholog_one2one 3 retrogenes
retro_sscr_1064, retro_sscr_308, retro_sscr_58,
Ictidomys tridecemlineatus ENSSTOG00000003502 possible_ortholog 3 retrogenes
retro_itri_256, retro_itri_751, retro_itri_872,
Tupaia belangeri ENSTBEG00000003457 ortholog_one2one 21 retrogenes
retro_tbel_103, retro_tbel_1275, retro_tbel_1575, retro_tbel_1748, retro_tbel_1803, retro_tbel_1888, retro_tbel_2104, retro_tbel_2521, retro_tbel_2554, retro_tbel_2971, retro_tbel_3008, retro_tbel_3339, retro_tbel_3388, retro_tbel_345, retro_tbel_3607, retro_tbel_3860, retro_tbel_4425, retro_tbel_673, retro_tbel_875, retro_tbel_913, retro_tbel_945,
Tursiops truncatus ENSTTRG00000008278 ortholog_one2one 5 retrogenes
retro_ttru_1308, retro_ttru_1608, retro_ttru_1686, retro_ttru_336, retro_ttru_593,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_149 92.41 94.77
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2. retro_cfam_249 59.65 69.93
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3. retro_cfam_499 68.22 81.70
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4. retro_cfam_1017 74.62 83.66
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5. retro_cfam_1074 85.71 95.42
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6. retro_cfam_1155 76.77 64.05
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7. retro_cfam_1251 91.72 94.77
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8. retro_cfam_1377 65.83 77.78
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9. retro_cfam_1998 61.86 76.47
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10. retro_cfam_2212 71.29 64.71
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Download FASTA sequences of all ENSCAFG00000028485 retrocopies