Parental gene:

RPS19, ENSECAG00000009738

Aliases:None
Description:ribosomal protein S19 [Source:HGNC Symbol;Acc:10402]
Organism:Horse (Equus caballus)
Coordinates:10:13830073..13837793(-)


>ENSECAG00000009738
TGGTCCGGCCCGCAGATGCCTGGAGTTACTGTAAAAGACGTGAACCAGCAGGAGTTCGTCCGAGCCCTGGCAGCCTTCCT
CAAAAAGTCCGGGAAGCTGAAAGTCCCTGAATGGGTGGACACTGTCAAGCTGGCCAAACATAAAGAGCTTGCTCCCTACG
ATGAGAACTGGTTCTACACGCGAGCTGCTTCTACAGCGCGGCACCTGTACCTCCGGGGTGGTGCTGGAGTCGGCTCCATG
ACCAAGATCTATGGGGGACGTCAGAGAAACGGTGTCATGCCCAGCCATTTTAGCAGAGGCTCCAAGAGCGTGGCCCGCAG
GGTCCTCCAAGCCCTGGAGGGGCTGAAAATGGTGGAAAAGGACCAAGATGGAGGCCGCAAACTGACACCTCAGGGACAGA
GAGATCTAGACAGAATCGCTGGACAGGTGGCTGCTGCCAACAAGAAGCATTAG

Library Parental gene expression (RPM)
SRP021940_articular_cartilage 1033 .55 RPM
SRP021940_cerebellum 247 .41 RPM
SRP021940_embryo 652 .92 RPM
SRP021940_placental_villous 325 .33 RPM
SRP021940_synovial_membrane 692 .26 RPM
SRP021940_testis 219 .58 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000028485 possible_ortholog 10 retrogenes
retro_cfam_1017, retro_cfam_1074, retro_cfam_1155, retro_cfam_1251, retro_cfam_1377, retro_cfam_149, retro_cfam_1998, retro_cfam_2212, retro_cfam_249, retro_cfam_499,
Callithrix jacchus ENSCJAG00000020243 ortholog_one2many 5 retrogenes
retro_cjac_1968, retro_cjac_2004, retro_cjac_2094, retro_cjac_2324, retro_cjac_3,
Dasypus novemcinctus ENSDNOG00000002376 ortholog_one2one 4 retrogenes
retro_dnov_1084, retro_dnov_1124, retro_dnov_1838, retro_dnov_2456,
Homo sapiens ENSG00000105372 ortholog_one2one 5 retrogenes
retro_hsap_1400, retro_hsap_2417, retro_hsap_3174, retro_hsap_3642, retro_hsap_667,
Microcebus murinus ENSMICG00000004554 ortholog_one2one 1 retrogene
retro_mmur_1480,
Macaca mulatta ENSMMUG00000013429 ortholog_one2one 8 retrogenes
retro_mmul_1201, retro_mmul_1358, retro_mmul_1807, retro_mmul_2007, retro_mmul_2443, retro_mmul_404, retro_mmul_607, retro_mmul_691,
Monodelphis domestica ENSMODG00000010067 ortholog_one2one 3 retrogenes
retro_mdom_1531, retro_mdom_1888, retro_mdom_883,
Mustela putorius furo ENSMPUG00000007164 ortholog_one2one 4 retrogenes
retro_mputfur_1071, retro_mputfur_1148, retro_mputfur_1470, retro_mputfur_1503,
Mus musculus ENSMUSG00000040952 ortholog_one2one 15 retrogenes
retro_mmus_1206, retro_mmus_1207, retro_mmus_1528, retro_mmus_1711, retro_mmus_1713, retro_mmus_2095, retro_mmus_2295, retro_mmus_2535, retro_mmus_2850, retro_mmus_3337, retro_mmus_3499, retro_mmus_639, retro_mmus_643, retro_mmus_684, retro_mmus_899,
Otolemur garnettii ENSOGAG00000026255 ortholog_one2one 3 retrogenes
retro_ogar_1315, retro_ogar_1663, retro_ogar_2305,
Rattus norvegicus ENSRNOG00000048199 ortholog_one2many 3 retrogenes
retro_rnor_221, retro_rnor_299, retro_rnor_51,
Sus scrofa ENSSSCG00000003042 possible_ortholog 3 retrogenes
retro_sscr_1064, retro_sscr_308, retro_sscr_58,
Ictidomys tridecemlineatus ENSSTOG00000003502 ortholog_one2one 3 retrogenes
retro_itri_256, retro_itri_751, retro_itri_872,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_263 68.46 84.67
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2. retro_ecab_815 76.24 66.67
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Download FASTA sequences of all ENSECAG00000009738 retrocopies