RetrogeneDB ID: retro_mluc_688

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429771:5105082..5106119(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000017740
• Aliases: None
• Description: None

Sequence

>retro_mluc_688
AGTCAGGCTCAGGAAAACGGAGAGAAGGGAGAATTCCATAAGTTGGCCAATGCCAAGATATTTCTGAGTGACTGCCTGGT
GTGTGACAGTTGTGTGACCGCAGAGGAAGGAGTCCAAGTTTCTCAACAGAACACCAAGGACTTCTTCTGTGTTCTGAACC
TTAATAAGAAATGTGATACCTCACAGCACAAAGTGCTGACAGTGTCCATGTGTCCTCAGTCTCTGCCTTATTTTGATGCT
AAATTCAGCCTCAGTGTCACTGATGCATCCAGAAGGCTCTGTGGCTTTCTCAAAAGCCTTGGGGTGCATTGTCTTTGACA
TGAAGATAGCTGCGGACTTCAGCATTCTGGAGAGTCAGAAGGAATTTGTGCATCGGTACTGCCAGCACCGTGAGGAAGAG
CCCCGGCTACCCATGCTGACCGCTGCCTGCCCCAGCTGGGACCGATATGCAGAGCATTTGCTGGGTCACCCATCACCCGC
CACCTCTGCATGGCCAAGTCTCCCCAGCAGATCATGGGCTCCCTGGTGAAGGATTACTTCACCAGACAGCAGAACCTGTC
CTCAGACAAGATTTTCCACGTCATCATGGCCTCATGTTATGACAAGAAACTGGAGGCCCTGTGAAAAGATGTTCCCACAA
CTTTACATAGTTCCCAGGGTGCTGACTGCATGTTAACCTCAAGTGAAATTGTCCAGATAATGGAGCAAAGTGACCTCGCC
TCGAATGACGCCACCGTGGACACTCTGTTTGGAGACATGAAGAAGGAGGTGAGGCTCCATGAGGGTGCCAGTTCCAACGG
GTACCAGGCACACGTCTTCAGGCACATGGCCGAGGAGCTGTTCAACCAGGACGTGGGAGTGCTCACCTACCGCACCCTGA
GGAACAAAGACTTCCAGGAGGTCACCCTTGAAAGGGACAAAGAGGTTCTGCTATGTTTTGAGGCTGCTTACAGCTTTCAG
AACATCCAGAAGTGGTCCTGAAGCTGCAGAGGGGCAAGTTCCCCTGCCACTTCGTGGAGATCCTGGCCTGCACCGGC

Alignment

ORF - retro_mluc_688 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.36 %
• Parental protein coverage: 76.64 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  SPAQENGEKGEFHKLADAKIFLSDCLACDSCVTAEEGVQVSQQNAKDFFRVLNLNKKCDASQHKVLAVSV
          S.AQENGEKGEFHKLA.AKIFLSDCL.CDSCVTAEEGVQVSQQN.KDFF.VLNLNKKCD.SQHKVL.VS.
Retrocopy SQAQENGEKGEFHKLANAKIFLSDCLVCDSCVTAEEGVQVSQQNTKDFFCVLNLNKKCDTSQHKVLTVSM

Parental  CPQSLPYFAAKFSLSVTDASRRLCGFLKS-LGVHYVFDMTIAADFSILESQKEFVRRYRQHREEEPRLPM
          CPQSLPYF.AKFSLSVTDASRRLCGFLKS.LG...VFDM.IAADFSILESQKEFV.RY.QHREEEPRLPM
Retrocopy CPQSLPYFDAKFSLSVTDASRRLCGFLKS>LGC-IVFDMKIAADFSILESQKEFVHRYCQHREEEPRLPM

Parental  LTSACPGWVRYAERVLGHP-ITPHLCTAKSPQQIMGSLVKDYFARRQNLSPDKIFHVIVAPCYDKKLEAL
          LT.ACP.W.RYAE..LGHP.IT.HLC.AKSPQQIMGSLVKDYF.R.QNLS.DKIFHVI.A.CYDKKLEAL
Retrocopy LTAACPSWDRYAEHLLGHP<ITRHLCMAKSPQQIMGSLVKDYFTRQQNLSSDKIFHVIMASCYDKKLEAL

Parental  REDVPTALHSSRGADCVLTSGEIVQLMEQSDLSADDALVDTLLTRFGDVKEEEVRRHEGASSDGYLAHIF
          ..DVPT.LHSS.GADC.LTS.EIVQ.MEQSDL...DA.VDTL...FGD.K..EVR.HEGASS.GY.AH.F
Retrocopy *KDVPTTLHSSQGADCMLTSSEIVQIMEQSDLASNDATVDTL---FGDMK-KEVRLHEGASSNGYQAHVF

Parental  RHAAKELFNEDVGALTYRSLRNKDFQEVTLERDGEVLLRFAAAYGFRNIQ-NVVLKLKRGKFPYHFVEVL
          RH.A.ELFN.DVG.LTYR.LRNKDFQEVTLERD.EVLL.F.AAY.F.NIQ..VVLKL.RGKFP.HFVE.L
Retrocopy RHMAEELFNQDVGVLTYRTLRNKDFQEVTLERDKEVLLCFEAAYSFQNIQ<EVVLKLQRGKFPCHFVEIL

Parental  ACAG
          AC.G
Retrocopy ACTG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_688 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 27 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000018178	1 retrocopy	retro_btau_820,
Canis familiaris	ENSCAFG00000012976	1 retrocopy	retro_cfam_659,
Dasypus novemcinctus	ENSDNOG00000011246	1 retrocopy	retro_dnov_1757,
Echinops telfairi	ENSETEG00000009329	1 retrocopy	retro_etel_999,
Myotis lucifugus	ENSMLUG00000017740	23 retrocopies	retro_mluc_1006, retro_mluc_1012, retro_mluc_1083, retro_mluc_1091, retro_mluc_1124, retro_mluc_1256, retro_mluc_1282, retro_mluc_1457, retro_mluc_1573, retro_mluc_1622, retro_mluc_1632, retro_mluc_1700, retro_mluc_1718, retro_mluc_1898, retro_mluc_1973, retro_mluc_2365, retro_mluc_671, retro_mluc_688 , retro_mluc_817, retro_mluc_825, retro_mluc_877, retro_mluc_879, retro_mluc_982,