RetrogeneDB ID: retro_mluc_1718

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429893:85900..87232(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000017740
• Aliases: None
• Description: None

Sequence

>retro_mluc_1718
ATGAAGTGTGATCACTGCACATGGAAGGAATGTAGTAAAAAAACAAAAACCGATGACCAAGAGAATGCCGCAGTCAACGT
CTGGAGTCCGGCTCAGGAGAACAGAGAGAAGGGAGAATTCCATAAGTTGGCCGACACCAAGATATTTCTGAGTGACTGCC
TGGCGTGTGACAGTTGTGTGACTGCAGAGGAAGGAGTCCAAGTTTCTCAGCAGAACACCAAGGACTTCTTTTGTGTTCTG
AACCTTAATAAGAAATGTGATACCTCACAGCACAAAGTGCTGGCAGTGTCCATGTGTCCTTAGTCCCTGATTTATTTTGC
TGCTAAATTCAGCCTCAGTGTTGCTGATGCATCCAGAAGGCTCTGCGGCTTCCTCAAAAGCCTTGGGGTGCACTGTTTTC
GACATGAAGATAGCTGCGGACTTCTGCATCCTGGAAAGTCAGAGGAATTTGTGCGTCGGCACTGCCAGCACCATGAGGAA
GAGCCCCGGCTACCCATGCTGACCTCTGCCTTCCCTGGCTGGGACTGATATTCAGAGTGTGTGCTGGGTCACCCCAAGAC
CCCCCACCTCTGTACAGCCAAGTCTCCCCAGCAGATCATGGGCTCTCTGGTGAAGGATTACTTCACCAAATGGCAGAACC
TGTCCCCAGACAAGATTTTCCACATCATTGTGGCCCCATGTTATGACAAACTGGAGGCCCTTAGAGAAGATGTTTCCACA
ACTTTACATAGTTCCCAGGGTGCTGACTGCATGTTAACCTCAGGTGAAATTGTCCAGATAATAGAGCAAAGTGACCTTGC
CTCGAAAGCTGTGGACACTCTGTTTGGAGACATGAAGGAGAAGGAGGTGAGGCTCCATGAGGGTGCCAGCTCCAACAGGT
ACCAGGCACACATCTTCAGGCACATGGCCAAGGAGCTGTTCAACCAAGATGTGAGAGTGCTCACCTACCGCACCCTGAGG
AACAAAGACTTCCAGGAGGTCACCCTTGAAAGGGATGGAGTGCCTCTGCTACGCTTTGAGTCTGCTTATGGCTTTCAGAA
CATCCAGAAGTGGTCCTGAAGCTGTAGAGGGCAAGTTCTCCTGCCACTTCGTGGAGGTCCTGGCCTGCGCCAGGGATGCC
TAAGCAGCAGAAGCCAGGCCCAGGCAGAGGATGGGTGTGCAGACAGGGCGCTGCTGTGGCAGATGGAAGGCATACACGCT
GCCATCCTGGTGTGGCCCCTAGAGACCATCACCCATGTGCAGGAGTTGTACCAGGAGTGCTGGGGTGGGGGCGGGGAGGG
GCCCAGGCAGCCCTGCACACCGCATAGCAGGCCCAGGGGAGCCTGCCAGAAC

Alignment

ORF - retro_mluc_1718 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.15 %
• Parental protein coverage: 98.25 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 5

Retrocopy - Parental Gene Alignment:

Parental  MKCEHCTRKECSKKTKTDDQENASADAPSPAQENGEKGEFHKLADAKIFLSDCLACDSCVTAEEGVQVSQ
          MKC.HCT.KECS.....DDQENA.....SPAQEN.EKGEFHKLAD.KIFLSDCLACDSCVTAEEGVQVSQ
Retrocopy MKCDHCTWKECSXXXXXDDQENAAVNVWSPAQENREKGEFHKLADTKIFLSDCLACDSCVTAEEGVQVSQ

Parental  QNAKDFFRVLNLNKKCDASQHKVLAVSVCPQSLPYFAAKFSLSVTDASRRLCGFLK-SLGVHYVFDMTIA
          QN.KDFF.VLNLNKKCD.SQHKVLAVS.CP.SL.YFAAKFSLSV.DASRRLCGFLK..LG...VFDM.IA
Retrocopy QNTKDFFCVLNLNKKCDTSQHKVLAVSMCP*SLIYFAAKFSLSVADASRRLCGFLK>ALGCT-VFDMKIA

Parental  ADFSILESQK-EFVRRYRQHREEEPRLPMLTSACPGWVRYAERVLGHPITPHLCTAKSPQQIMGSLVKDY
          ADF.ILESQ..EFVRR..QH.EEEPRLPMLTSA.PGW..Y.E.VLGHP.TPHLCTAKSPQQIMGSLVKDY
Retrocopy ADFCILESQR<EFVRRHCQHHEEEPRLPMLTSAFPGWD*YSECVLGHPKTPHLCTAKSPQQIMGSLVKDY

Parental  FARRQNLSPDKIFHVIVAPCYDKKLEALREDVPTALHSSRGADCVLTSGEIVQLMEQSDLSADDALVDTL
          F...QNLSPDKIFH.IVAPCYD.KLEALREDV.T.LHSS.GADC.LTSGEIVQ..EQSDL......VDTL
Retrocopy FTKWQNLSPDKIFHIIVAPCYD-KLEALREDVSTTLHSSQGADCMLTSGEIVQIIEQSDLAS--KAVDTL

Parental  LTRFGDVKEEEVRRHEGASSDGYLAHIFRHAAKELFNEDVGALTYRSLRNKDFQEVTLERDGEVLLRFAA
          ...FGD.KE.EVR.HEGASS..Y.AHIFRH.AKELFN.DV..LTYR.LRNKDFQEVTLERDG..LLRF..
Retrocopy ---FGDMKEKEVRLHEGASSNRYQAHIFRHMAKELFNQDVRVLTYRTLRNKDFQEVTLERDGVPLLRFES

Parental  AYGFRNIQ-NVVLKLKR-GKFPYHFVEVLACA-GGCLSGRGQAQAEDGRADRALLRQMEGIYAAIPVRPP
          AYGF.NIQ..VVLKL.R.GKF..HFVEVLACA..GCLS.R.QAQAEDG.ADRALL.QMEGI.AAI.V.P.
Retrocopy AYGFQNIQ<EVVLKL*R<GKFSCHFVEVLACA<QGCLSSRSQAQAEDGCADRALLWQMEGIHAAILVWPL

Parental  ETSAHVQELYQE-WLGGADSPR-PRALHTAYQGPGQS
          ET..HVQELYQE.W.GG...PR.P...H....G..Q.
Retrocopy ETITHVQELYQECWGGGGEGPRQPCTPHSRPRGACQN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1718 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 27 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000018178	1 retrocopy	retro_btau_820,
Canis familiaris	ENSCAFG00000012976	1 retrocopy	retro_cfam_659,
Dasypus novemcinctus	ENSDNOG00000011246	1 retrocopy	retro_dnov_1757,
Echinops telfairi	ENSETEG00000009329	1 retrocopy	retro_etel_999,
Myotis lucifugus	ENSMLUG00000017740	23 retrocopies	retro_mluc_1006, retro_mluc_1012, retro_mluc_1083, retro_mluc_1091, retro_mluc_1124, retro_mluc_1256, retro_mluc_1282, retro_mluc_1457, retro_mluc_1573, retro_mluc_1622, retro_mluc_1632, retro_mluc_1700, retro_mluc_1718 , retro_mluc_1898, retro_mluc_1973, retro_mluc_2365, retro_mluc_671, retro_mluc_688, retro_mluc_817, retro_mluc_825, retro_mluc_877, retro_mluc_879, retro_mluc_982,