RetrogeneDB ID: retro_mluc_1006

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429787:11437443..11438412(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000017740
• Aliases: None
• Description: None

Sequence

>retro_mluc_1006
ATGAAGTGTGATCACTGCACACGGAAGGAATGTAGTAAAAAAACAGAAACCGATGACCAAGAGAATGCTGCAGTCACTGT
CCGAAATCCGGCTCAGGAGAATGGAGAGAAGGGAGAATTCCATAATTTGGCTGATGCCAAGATATTTCTGAGTGACTGCC
TGGCATTTGACAGTTGTGTAACCACAGAGGAAGGAGTCCAAGTTTCTGAACAGAACACCAAGGACTTCTTCTATGTTCTG
AACCTTAATAAGAAATGTGATATCTCACAGCACAAAGTGCTGGCAGTGTCCGTGTGTCCTTAGTTTCTGCCTTATTTTGC
TGCTAAATTCAGCTTCAGTGTCACTGATGCATCCAGAAGGCTCTGCGGCTTTCTCAAAAGCTTTGGGGCTCACTGTCTTT
GACATGAAGATAGCTGCGGACTTCAGCATCCTGGAGAGTCAGAAGGAATTTGTGCGTCGGTAGTGCCAGCACCGTGAGGA
AGAGCCCCGGCTACCCATGCTGACCTCCACCTGCCCCAGCTGGGTCCGATATGCAGAGCATGTGCTGGGTCACCCATCAC
CCACCACCTCTGCATGGCCAAGTCTCCCCAGCAGATCATGGGCTCTCCGGTGAAGGATTACTTCACCAGACAGCAAAACC
TGTCCCCAGACAAGATTTTCCACGTCATTGTGGCCCCGTGTTATGACAAGAAACTGGAGGCCCTTTGAGAAGATGTTCCC
ACAGCTTCGCACAGTTCCCAGGGTGCTGACTGTGTGTTATCCTCAGGTGAAATTGTCCAGATAATGGAGCAAAGTGACCT
CGCCTCGGATGACGCCACCGTGGACACTCTGTTTGGAGACATGAAGGAGAAGGAGGTGAGGCTCCACAAGGGTGCCAGCT
CCAACAGGTACCAGGCACACGTCTTCAGGCACTTGGCCCAGGAGCTGTTCAATGAGGACGTGGGAGTGCTCACCTACCGC
ACCCTGAGG

Alignment

ORF - retro_mluc_1006 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 82.67 %
• Parental protein coverage: 71.4 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MKCEHCTRKECSKKTKTDDQENASADAPSPAQENGEKGEFHKLADAKIFLSDCLACDSCVTAEEGVQVSQ
          MKC.HCTRKECSKKT.TDDQENA......PAQENGEKGEFH.LADAKIFLSDCLA.DSCVT.EEGVQVS.
Retrocopy MKCDHCTRKECSKKTETDDQENAAVTVRNPAQENGEKGEFHNLADAKIFLSDCLAFDSCVTTEEGVQVSE

Parental  QNAKDFFRVLNLNKKCDASQHKVLAVSVCPQSLPYFAAKFSLSVTDASRRLCGFLKS-LGVHYVFDMTIA
          QN.KDFF.VLNLNKKCD.SQHKVLAVSVCP..LPYFAAKFS.SVTDASRRLCGFLKS.LG...VFDM.IA
Retrocopy QNTKDFFYVLNLNKKCDISQHKVLAVSVCP*FLPYFAAKFSFSVTDASRRLCGFLKS>LGLT-VFDMKIA

Parental  ADFSILESQKEFVRRYRQHREEEPRLPMLTSACPGWVRYAERVLGHP-ITPHLCTAKSPQQIMGSLVKDY
          ADFSILESQKEFVRR..QHREEEPRLPMLTS.CP.WVRYAE.VLGHP.IT.HLC.AKSPQQIMGS.VKDY
Retrocopy ADFSILESQKEFVRR*CQHREEEPRLPMLTSTCPSWVRYAEHVLGHP<ITHHLCMAKSPQQIMGSPVKDY

Parental  FARRQNLSPDKIFHVIVAPCYDKKLEALREDVPTALHSSRGADCVLTSGEIVQLMEQSDLSADDALVDTL
          F.R.QNLSPDKIFHVIVAPCYDKKLEAL.EDVPTA.HSS.GADCVL.SGEIVQ.MEQSDL..DDA.VDTL
Retrocopy FTRQQNLSPDKIFHVIVAPCYDKKLEAL*EDVPTASHSSQGADCVLSSGEIVQIMEQSDLASDDATVDTL

Parental  LTRFGDVKEEEVRRHEGASSDGYLAHIFRHAAKELFNEDVGALTYRSLR
          ...FGD.KE.EVR.H.GASS..Y.AH.FRH.A.ELFNEDVG.LTYR.LR
Retrocopy ---FGDMKEKEVRLHKGASSNRYQAHVFRHLAQELFNEDVGVLTYRTLR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1006 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 27 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000018178	1 retrocopy	retro_btau_820,
Canis familiaris	ENSCAFG00000012976	1 retrocopy	retro_cfam_659,
Dasypus novemcinctus	ENSDNOG00000011246	1 retrocopy	retro_dnov_1757,
Echinops telfairi	ENSETEG00000009329	1 retrocopy	retro_etel_999,
Myotis lucifugus	ENSMLUG00000017740	23 retrocopies	retro_mluc_1006 , retro_mluc_1012, retro_mluc_1083, retro_mluc_1091, retro_mluc_1124, retro_mluc_1256, retro_mluc_1282, retro_mluc_1457, retro_mluc_1573, retro_mluc_1622, retro_mluc_1632, retro_mluc_1700, retro_mluc_1718, retro_mluc_1898, retro_mluc_1973, retro_mluc_2365, retro_mluc_671, retro_mluc_688, retro_mluc_817, retro_mluc_825, retro_mluc_877, retro_mluc_879, retro_mluc_982,