RetrogeneDB ID: retro_mluc_1898

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429942:1590141..1591187(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000017740
• Aliases: None
• Description: None

Sequence

>retro_mluc_1898
TGTGTCCTTAGTCTCTGCCTTATTTTGCTGCTAAATTCAGCCTGTGTCACTGATGCATCCAGAAGGCTCTGCGGCTTTCT
CAAAAGCCTTGGGGCGCACTGTCTTTGACATGAAGATAGCTGTGGACTTCAGCTTCTTGGAGAGTCAGAAGGAATTTGTG
CGTCGGTACTGCCAGCACCATGAGGAAGAGCCCCGGCTACCCATGCTGACCTCCGCCTGCCCCGGCTGGGACCAATATGC
AGAGCATGTGCTGGGTCACCCCATCACCCCCACCTCTGCACCACCAAGTCTCCCCAGCAGATCATGGGCTCTCTGGTGAA
GGACTACTTCACCAGACGGCAGAACCTGTCCCCAGACAAGATTTTCCATGTCAGTGGGGCCCCATGTTATCACAAGAAAC
TGAGAGCCCTTTGAGAAGATGTTCCCATACCTTTGCATAGTTCCCGGGGTGCTGACTGCATGTTAACCTCAGGTGAAGTT
GTCCAGATAATGGAGAAAAGTGACCTCGCCTTGAACGCTGCCACCGTGGACACTCTGTTTGGAGACGTGAAGGAAGAGGA
GGTGAGGCTCCACGAGGGTGCCAGCTCCGACGGGTACCTGGTGCACATCTTCAGGCACATGGCCAAGGAGCTGTTCAACG
AGGATGTGGGGGTGCTCACCTACTGCTCCCTGAGGAACAAAGACTTCCAGGAGGTCACCCTTGAAAGGGACAGAGAGGTT
CTGCTATGCTTTGAGGCTGCTAATGGCTTTTGGAACATCCAGAAGTGGTTCTGAAGCTGTAGAGGGGCAAGTTCCCCTGC
CACTTCATGGAGGTCCTGGCCTGCACCAGGCATGTCTAAGCAGCAGGGGCCAGGCCCAGGTGGAGGACTGGTGTGCGGAC
AGGGCACTGCTTCGGCAGATGAAAGGCATCTATGCTGCCATCCCGGTGTGGCCCCCAGAGACCAGCGCCCATGTGCAGAA
GCTGTACCAGGAGTGGCTGGGTGGGGGGACTCCCCCCGGGCTCAGGCGCCCTGCACACCATCTAGCAGGGCCCAGGGAAG
CCTGCC

Alignment

ORF - retro_mluc_1898 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 77.37 %
• Parental protein coverage: 77.07 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 5

Retrocopy - Parental Gene Alignment:

Parental  CPQSLPYFAAKFSLSVTDASRRLCGFLKS-LGVHYVFDMTIAADFSILESQKEFVRRYRQHREEEPRLPM
          C..SL.......S..VTDASRRLCGFLKS.LG...VFDM.IA.DFS.LESQKEFVRRY.QH.EEEPRLPM
Retrocopy CVLSLCLILLLNSACVTDASRRLCGFLKS>LG-RTVFDMKIAVDFSFLESQKEFVRRYCQHHEEEPRLPM

Parental  LTSACPGWVRYAERVLGHPITP-HLCTAKSPQQIMGSLVKDYFARRQNLSPDKIFHVIVAPCYDKKLEAL
          LTSACPGW..YAE.VLGHPITP.HLCT.KSPQQIMGSLVKDYF.RRQNLSPDKIFHV..APCY.KKL.AL
Retrocopy LTSACPGWDQYAEHVLGHPITP<HLCTTKSPQQIMGSLVKDYFTRRQNLSPDKIFHVSGAPCYHKKLRAL

Parental  REDVPTALHSSRGADCVLTSGEIVQLMEQSDLSADDALVDTLLTRFGDVKEEEVRRHEGASSDGYLAHIF
          .EDVP..LHSSRGADC.LTSGE.VQ.ME.SDL....A.VDTL...FGDVKEEEVR.HEGASSDGYL.HIF
Retrocopy *EDVPIPLHSSRGADCMLTSGEVVQIMEKSDLALNAATVDTL---FGDVKEEEVRLHEGASSDGYLVHIF

Parental  RHAAKELFNEDVGALTYRSLRNKDFQEVTLERDGEVLLRFAAAYGFRNIQ-NVVLKLKRGKFPYHFVEVL
          RH.AKELFNEDVG.LTY.SLRNKDFQEVTLERD.EVLL.F.AA.GF.NIQ..VVLKL.RGKFP.HF.EVL
Retrocopy RHMAKELFNEDVGVLTYCSLRNKDFQEVTLERDREVLLCFEAANGFWNIQ<EVVLKL*RGKFPCHFMEVL

Parental  ACA-GGCLSGRGQAQAEDGRADRALLRQMEGIYAAIPVRPPETSAHVQELYQEWLGGADSPRPR-ALHTA
          AC....CLS.RGQAQ.ED..ADRALLRQM.GIYAAIPV.PPETSAHVQ.LYQEWLGG...P..R.ALHT.
Retrocopy ACT<QACLSSRGQAQVEDWCADRALLRQMKGIYAAIPVWPPETSAHVQKLYQEWLGGGTPPGLR>ALHTI

Parental  YQGPGQSA
          .QGPG..A
Retrocopy *QGPGKPA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1898 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 27 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000018178	1 retrocopy	retro_btau_820,
Canis familiaris	ENSCAFG00000012976	1 retrocopy	retro_cfam_659,
Dasypus novemcinctus	ENSDNOG00000011246	1 retrocopy	retro_dnov_1757,
Echinops telfairi	ENSETEG00000009329	1 retrocopy	retro_etel_999,
Myotis lucifugus	ENSMLUG00000017740	23 retrocopies	retro_mluc_1006, retro_mluc_1012, retro_mluc_1083, retro_mluc_1091, retro_mluc_1124, retro_mluc_1256, retro_mluc_1282, retro_mluc_1457, retro_mluc_1573, retro_mluc_1622, retro_mluc_1632, retro_mluc_1700, retro_mluc_1718, retro_mluc_1898 , retro_mluc_1973, retro_mluc_2365, retro_mluc_671, retro_mluc_688, retro_mluc_817, retro_mluc_825, retro_mluc_877, retro_mluc_879, retro_mluc_982,