RetrogeneDB ID: retro_mluc_1124

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429796:9243396..9244230(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000017740
• Aliases: None
• Description: None

Sequence

>retro_mluc_1124
TGCACATGGAAGGAATGTAGTAAAAAAACAAAAACCGATGACTAAGAGAATGCTGCAGTCAACATCGGCAGTCCGGCTCA
GGAGAACAGAGAGAAGGGAGAATTCCATAAGTTGGCTGATGCCAAGATACTTCTGAGTGACTGCCTGGCGTATGACAGTT
GTGTGACTGCAGAGGAAGGAGTCCAAGTTTCTCAACAGTACACCAAGGACTTCTTCTGTGTTCTGAACCTTAATAAGAAA
TGTGATACCTCACAGAACAAAGTGCTGGCAGTGTCAGTGTGTCCTCAGTCTCTGCCTTATTTTGCTGCTAAATTCAGCCT
CAGTGTCACTGATGCATCCAGAAGGCTCTGTAGCTTTCTCAAAAGCCTTGGGGAGCACTGTCTTTGATGTGAAGATAGCT
GCGGACTTCAGCATCCTGAAGAGTCAAAAGGAATTTGTGCATCGGTACTGCCAGCACCATGAGGAAGAGCCCCGGCCACC
CATGCTGACCTCTACCTGTCCCGGCTGGGTCTGATATGCAGAGCAGGTACTGGGTCATCCCATCACCCCCACCTCTGAAC
AGTCAAGTCTCCCCAGCGGATCATGGGCTCTCTGGTGAAAGATTACTTCGCCAGATGTCAGAACCTGTCCCCAGACAAGA
TTTTCCACATCACTGTGGCCCTGTGTTATGACAAGAAACTGGAGGCCCTTTGAGAAGATGTTCCCACAGCTTTACATAGT
TCCCAGGGTGCTGACTGTGTGTTAACCTCAGGTGAAATTGTCCAGATAATGGAACAAAGTGACCTCGCCTCAAATGATGC
TGCCGTGGACACTGTTTGGAGACATGAAGGAGAA

Alignment

ORF - retro_mluc_1124 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.72 %
• Parental protein coverage: 60.92 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  CTRKECSKKTKTDDQENASADAPSPAQENGEKGEFHKLADAKIFLSDCLACDSCVTAEEGVQVSQQNAKD
          CT.KECS.....DD.ENA.....SPAQEN.EKGEFHKLADAKI.LSDCLA.DSCVTAEEGVQVSQQ..KD
Retrocopy CTWKECSXXXXXDD*ENAAVNIGSPAQENREKGEFHKLADAKILLSDCLAYDSCVTAEEGVQVSQQYTKD

Parental  FFRVLNLNKKCDASQHKVLAVSVCPQSLPYFAAKFSLSVTDASRRLCGFLK-SLGVHYVFDMTIAADFSI
          FF.VLNLNKKCD.SQ.KVLAVSVCPQSLPYFAAKFSLSVTDASRRLC.FLK..LG...VFD..IAADFSI
Retrocopy FFCVLNLNKKCDTSQNKVLAVSVCPQSLPYFAAKFSLSVTDASRRLCSFLK>ALG-STVFDVKIAADFSI

Parental  LESQKEFVRRYRQHREEEPRLPMLTSACPGWVRYAERVLGHPITP-HLCTAKSPQQIMGSLVKDYFARRQ
          L.SQKEFV.RY.QH.EEEPR.PMLTS.CPGWV.YAE.VLGHPITP.HL.T.KSPQ.IMGSLVKDYFAR.Q
Retrocopy LKSQKEFVHRYCQHHEEEPRPPMLTSTCPGWV*YAEQVLGHPITP<HL*TVKSPQRIMGSLVKDYFARCQ

Parental  NLSPDKIFHVIVAPCYDKKLEALREDVPTALHSSRGADCVLTSGEIVQLMEQSDLSADDALVDTLLTRFG
          NLSPDKIFH..VA.CYDKKLEAL.EDVPTALHSS.GADCVLTSGEIVQ.MEQSDL...DA.VDT.....G
Retrocopy NLSPDKIFHITVALCYDKKLEAL*EDVPTALHSSQGADCVLTSGEIVQIMEQSDLASNDAAVDTVWRHEG

Parental  D
          .
Retrocopy E

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1124 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 27 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000018178	1 retrocopy	retro_btau_820,
Canis familiaris	ENSCAFG00000012976	1 retrocopy	retro_cfam_659,
Dasypus novemcinctus	ENSDNOG00000011246	1 retrocopy	retro_dnov_1757,
Echinops telfairi	ENSETEG00000009329	1 retrocopy	retro_etel_999,
Myotis lucifugus	ENSMLUG00000017740	23 retrocopies	retro_mluc_1006, retro_mluc_1012, retro_mluc_1083, retro_mluc_1091, retro_mluc_1124 , retro_mluc_1256, retro_mluc_1282, retro_mluc_1457, retro_mluc_1573, retro_mluc_1622, retro_mluc_1632, retro_mluc_1700, retro_mluc_1718, retro_mluc_1898, retro_mluc_1973, retro_mluc_2365, retro_mluc_671, retro_mluc_688, retro_mluc_817, retro_mluc_825, retro_mluc_877, retro_mluc_879, retro_mluc_982,