RetrogeneDB ID: retro_mluc_1632

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429875:3001674..3002974(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000025605
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000017740
• Aliases: None
• Description: None

Sequence

>retro_mluc_1632
ATGCAGTGTGATCACTGCAAACAGAAGGAATGTCATAAAAAAACAAAAACCGATGACCAAGAGAATGTCACAGTCAACGT
CCGGAGTCTAGCTCAGGAGAACGGAGAGAAGGGAGAATTCCATAAGTTGGCCGATGTCAAGATATTTCTGAGTGACTGCC
TGGCGTGTGACAGTTGTGTGACCGCAGAGGAAGGAGTCCAAGTTTCTCAACAGAACACCAAGGACTTCTTCCATGTTCTG
AACCTTAATAAGAAATGTGATACCTCACAGCACAAGATGCTGGCAGTGTCTGTGTGTCCTTAGTCTCTGCCTTATTTTGC
TGCTAAATTCAGCCTCATTGTCACTGATGCATCCAGAAGGCTCTGCGGCTTTCTCAAAAGCCTTGGGGTGCACTGTCTTT
GACATGAAGATAGCTGCGGACTTCAGCATCCTGGAGAGTCAGAAGGAATTTGTGCGTCGGTACTGCCAGCACCGTGAGGA
AGAGCCCCAGCTCCCCATGCTGACCTCCACCTGCACCGGCTGGGACCGATATGCAGAGCACGTGCCGGGTCACCCCATCA
ACCCCACCTCTGAACGGCCAAGTCTCCCATGGGCTCTCTGGTGAAGGATTACTTCACCAGATGGCAGAATCTGTTCCCAG
ACAAGATTTTCCACATCATTGTGGACCCGTGTTATGACAGGAAACTGGAGGCCCTTTAAGAAGATGTTCCCACAGCTTTA
CATAGTTCCCAGAGTGCTGACTGCTTGTTAACCTCAGGTGAAATTGTCCAGATAATGGAGCAAAGTGACCTCGCCTTGAA
TGACACCACTGTGGACGCTCTGTTTAGAGACAGGAAGGAGAAGGAGGTGAGGCTCCACGAGGGTGCCAGCTCCGATGGGT
ACCTGGCGCACATCTTCAGGCACATGGCCAAGGAGCTGTTCAACGAGGACATGGGAGTGCTCACCTACCGCACCCTGAGC
AACAAAGACTTCCAGGAGGTCACCCTTGAAAGGGACGGAGAGGTTCTACTATGCTTTGAGGCTGCTTACGGCTTTCCGAA
CAGCCAGAAGTGGTCCTGAAGCTGTAGAGGGGCAAGTTCCCCTGCCACTTTGTGGAGGTCCTGGCCTGCGCCGGGCATGC
CTAAGCGACAGGGGCCAGGCTCAGGTGGACGACGGGTGTGCAGACAGGGCACTGCTGTGGCAGATGGAAGGCATCTATGC
TGCCATTCCAGTGTGGCCCCCGGAGACCAGCGCCCATGTGCAGGAGCTGTACTAGGAGTGGCTGGTTTGGGGGCGGGGGA
TGACTTCCCCTGGGCCCAGG

Alignment

ORF - retro_mluc_1632 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 78.43 %
• Parental protein coverage: 95.63 %
• Number of stop codons detected: 5
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  MKCEHCTRKECSKKTKTDDQENASADAPSPAQENGEKGEFHKLADAKIFLSDCLACDSCVTAEEGVQVSQ
          M.C.HC..KEC......DDQEN......S.AQENGEKGEFHKLAD.KIFLSDCLACDSCVTAEEGVQVSQ
Retrocopy MQCDHCKQKECHXXXXXDDQENVTVNVRSLAQENGEKGEFHKLADVKIFLSDCLACDSCVTAEEGVQVSQ

Parental  QNAKDFFRVLNLNKKCDASQHKVLAVSVCPQSLPYFAAKFSLSVTDASRRLCGFLK-SLGVHYVFDMTIA
          QN.KDFF.VLNLNKKCD.SQHK.LAVSVCP.SLPYFAAKFSL.VTDASRRLCGFLK..LG...VFDM.IA
Retrocopy QNTKDFFHVLNLNKKCDTSQHKMLAVSVCP*SLPYFAAKFSLIVTDASRRLCGFLK>ALGCT-VFDMKIA

Parental  ADFSILESQKEFVRRYRQHREEEPRLPMLTSACPGWVRYAERVLGHPITP-HLCTAKSPQQIMGSLVKDY
          ADFSILESQKEFVRRY.QHREEEP.LPMLTS.C.GW.RYAE.V.GHPI.P.HL.TAKSP...MGSLVKDY
Retrocopy ADFSILESQKEFVRRYCQHREEEPQLPMLTSTCTGWDRYAEHVPGHPINP<HL*TAKSP---MGSLVKDY

Parental  FARRQNLSPDKIFHVIVAPCYDKKLEALREDVPTALHSSRGADCVLTSGEIVQLMEQSDLSADDALVDTL
          F.R.QNL.PDKIFH.IV.PCYD.KLEAL.EDVPTALHSS..ADC.LTSGEIVQ.MEQSDL...D..VD.L
Retrocopy FTRWQNLFPDKIFHIIVDPCYDRKLEAL*EDVPTALHSSQSADCLLTSGEIVQIMEQSDLALNDTTVDAL

Parental  LTRFGDVKEEEVRRHEGASSDGYLAHIFRHAAKELFNEDVGALTYRSLRNKDFQEVTLERDGEVLLRFAA
          ...F.D.KE.EVR.HEGASSDGYLAHIFRH.AKELFNED.G.LTYR.L.NKDFQEVTLERDGEVLL.F.A
Retrocopy ---FRDRKEKEVRLHEGASSDGYLAHIFRHMAKELFNEDMGVLTYRTLSNKDFQEVTLERDGEVLLCFEA

Parental  AYGFRNIQ-NVVLKLKRGKFPYHFVEVLACAG-GCLSGRGQAQAEDGRADRALLRQMEGIYAAIPVRPPE
          AYGF.N.Q..VVLKL.RGKFP.HFVEVLACAG..CLS.RGQAQ..DG.ADRALL.QMEGIYAAIPV.PPE
Retrocopy AYGFPNSQ<EVVLKL*RGKFPCHFVEVLACAG<ACLSDRGQAQVDDGCADRALLWQMEGIYAAIPVWPPE

Parental  TSAHVQELYQEWL---GGADSPRPR
          TSAHVQELY.EWL....G..SP.PR
Retrocopy TSAHVQELY*EWLVWGRGMTSPGPR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1632 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 27 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000018178	1 retrocopy	retro_btau_820,
Canis familiaris	ENSCAFG00000012976	1 retrocopy	retro_cfam_659,
Dasypus novemcinctus	ENSDNOG00000011246	1 retrocopy	retro_dnov_1757,
Echinops telfairi	ENSETEG00000009329	1 retrocopy	retro_etel_999,
Myotis lucifugus	ENSMLUG00000017740	23 retrocopies	retro_mluc_1006, retro_mluc_1012, retro_mluc_1083, retro_mluc_1091, retro_mluc_1124, retro_mluc_1256, retro_mluc_1282, retro_mluc_1457, retro_mluc_1573, retro_mluc_1622, retro_mluc_1632 , retro_mluc_1700, retro_mluc_1718, retro_mluc_1898, retro_mluc_1973, retro_mluc_2365, retro_mluc_671, retro_mluc_688, retro_mluc_817, retro_mluc_825, retro_mluc_877, retro_mluc_879, retro_mluc_982,