RetrogeneDB ID: retro_mluc_671

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429771:5200149..5201502(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000017740
• Aliases: None
• Description: None

Sequence

>retro_mluc_671
GTGAAGTGTGATCACTGCACACGGAAGGAATGTAGTAAAAAAACAAAAACCGATGACCAAGAGAATGCTGCAGTCAACGT
CCGGAGTCTGGCTCAGGAGAACTGAGAGAAGGGAGAATTCCATAAGTTGGCTGATGCCAAGATATTTCTGAGTGACTGCC
TGGCGTGTGACAGTTGTGTGACCGCAGAGGAAGGAGTCCAAGTTTCTCAACAGAACACCAAGGACTTCTTCCGTGTTCTG
AACCTTAATAAGAAATGTGATTCCTCACAGCACAAAGTGCTGACAGTGTCCATATGTCCTTAGTCTCTACCTTATTTTGC
TGCTAAATTCAGCCTCAGTGTCACTGATGCATCCAGAAGGCTCTGTGGCTTTCTCAAAAGTCTTGGGGTGCATTGTCTTT
GACATGAAGATAGCTGCGGACTTCAGCATTCTGGAGAGTCAGAAGGAATTTGTGCATTGGTACTGCCAGCACCGTGAGGA
AGAGCCCCGGCTACCCATGCTGACCTCCGCCTGCCCCAGCTGGGACCGATATGCAGAGCATGTGCTGGGTCACCCCATCA
CCCCCACCTCTGCATGGCCAAGTCTCCCCAGCAGATCATGGGCTCTCTGGTAAGGATTACTTCACCAGACAGCAGAACCT
GTCCCCAGACAAGATTTTCCACGTCATCATGGTCCTGTGTTATGACAAGAAACTGCTGGCCTTTGAGAAGATGTTCCCAC
AGCTTCGCACAGTTCCCAGGGTCCTGACTGTTTGTAAACCTTAGGTGAAAATGTTCAGATAATGGGGCAAAGTGACCTTG
CCTCGAGTGATGCTGCCGTGGACACGCTGTTTGGAGACATGAAGGAGAAGGAGGTGAGGCTCCACCAGGGTGCTAGCTCC
GACAGGTACCTGGCACACATCTTCAGGCACATGGCCGAGGAACTGTTCAACGAGGACGTGGGAGTGCTCACCTACCGCAC
CCTGAGGAACAAAGATGTCCAGGAGGTCACCCTTGAAAGGGATGGAGAGGTTCTGCTATGATTTGAGGCTGCTTATGGCT
TTCAGAACATCCAGAAGTGGTCCTGAAGCTGCAGAGGGGCAAGTTCCCCTGCCACTTCGTGGAGGTCCTGGCCTGCGCCA
GGCATACCTAAGTGGCAGAGTCCAGGCCCAGGTGGATGTTGGTTGTGCAGACAGGGCACTGCTGCAGCAGATGGAAGGCA
TCTACGCTGCCATCTTGGTGTGGCCCCCGGAGACCAGTGCCCATGTGCAGGAGCTGTACCAGGAGTGACTGGAACGGGAG
GGTGGGTGACTCCCCCCGGGCCCAGGCAGCCCTGCACACTGCCTAGCAGGGCTCAGTGCAGCCTGCCAAGACA

Alignment

ORF - retro_mluc_671 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 77.75 %
• Parental protein coverage: 98.91 %
• Number of stop codons detected: 7
• Number of frameshifts detected: 7

Retrocopy - Parental Gene Alignment:

Parental  MKCEHCTRKECSKKTKTDDQENASADAPSPAQENGEKGEFHKLADAKIFLSDCLACDSCVTAEEGVQVSQ
          .KC.HCTRKECS.....DDQENA.....S.AQEN.EKGEFHKLADAKIFLSDCLACDSCVTAEEGVQVSQ
Retrocopy VKCDHCTRKECSXXXXXDDQENAAVNVRSLAQEN*EKGEFHKLADAKIFLSDCLACDSCVTAEEGVQVSQ

Parental  QNAKDFFRVLNLNKKCDASQHKVLAVSVCPQSLPYFAAKFSLSVTDASRRLCGFLKS-LGVHYVFDMTIA
          QN.KDFFRVLNLNKKCD.SQHKVL.VS.CP.SLPYFAAKFSLSVTDASRRLCGFLKS.LG...VFDM.IA
Retrocopy QNTKDFFRVLNLNKKCDSSQHKVLTVSICP*SLPYFAAKFSLSVTDASRRLCGFLKS>LGC-IVFDMKIA

Parental  ADFSILESQKEFVRRYRQHREEEPRLPMLTSACPGWVRYAERVLGHPITP-HLCTAKSPQQIMGSLV-KD
          ADFSILESQKEFV..Y.QHREEEPRLPMLTSACP.W.RYAE.VLGHPITP.HLC.AKSPQQIMGSLV.KD
Retrocopy ADFSILESQKEFVHWYCQHREEEPRLPMLTSACPSWDRYAEHVLGHPITP<HLCMAKSPQQIMGSLV<KD

Parental  YFARRQNLSPDKIFHVIVAPCYDKKLEALR-EDVPTALHSSRGADCVLTSGEIVQLMEQSDLSADDALVD
          YF.R.QNLSPDKIFHVI...CYDKKL.A...EDVPTA.HSS.G.DC..T.GE.VQ.M.QSDL...DA.VD
Retrocopy YFTRQQNLSPDKIFHVIMVLCYDKKLLAFE<EDVPTASHSSQGPDCL*TLGENVQIMGQSDLASSDAAVD

Parental  TLLTRFGDVKEEEVRRHEGASSDGYLAHIFRHAAKELFNEDVGALTYRSLRNKDFQEVTLERDGEVLLRF
          TL...FGD.KE.EVR.H.GASSD.YLAHIFRH.A.ELFNEDVG.LTYR.LRNKD.QEVTLERDGEVLL.F
Retrocopy TL---FGDMKEKEVRLHQGASSDRYLAHIFRHMAEELFNEDVGVLTYRTLRNKDVQEVTLERDGEVLL*F

Parental  AAAYGFRNIQ-NVVLKLKRGKFPYHFVEVLACA-GGCLSGRGQAQAEDGRADRALLRQMEGIYAAIPVRP
          .AAYGF.NIQ..VVLKL.RGKFP.HFVEVLACA....LSGR.QAQ...G.ADRALL.QMEGIYAAI.V.P
Retrocopy EAAYGFQNIQ<EVVLKLQRGKFPCHFVEVLACA<QAYLSGRVQAQVDVGCADRALLQQMEGIYAAILVWP

Parental  PETSAHVQELYQEWL---GGADSPRP-RALHTAYQGPGQSASS
          PETSAHVQELYQE.L...GG...P.P..ALHTA.QG..Q.A..
Retrocopy PETSAHVQELYQE*LEREGG*LPPGP>AALHTA*QGSVQPAKT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_671 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 27 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000018178	1 retrocopy	retro_btau_820,
Canis familiaris	ENSCAFG00000012976	1 retrocopy	retro_cfam_659,
Dasypus novemcinctus	ENSDNOG00000011246	1 retrocopy	retro_dnov_1757,
Echinops telfairi	ENSETEG00000009329	1 retrocopy	retro_etel_999,
Myotis lucifugus	ENSMLUG00000017740	23 retrocopies	retro_mluc_1006, retro_mluc_1012, retro_mluc_1083, retro_mluc_1091, retro_mluc_1124, retro_mluc_1256, retro_mluc_1282, retro_mluc_1457, retro_mluc_1573, retro_mluc_1622, retro_mluc_1632, retro_mluc_1700, retro_mluc_1718, retro_mluc_1898, retro_mluc_1973, retro_mluc_2365, retro_mluc_671 , retro_mluc_688, retro_mluc_817, retro_mluc_825, retro_mluc_877, retro_mluc_879, retro_mluc_982,