RetrogeneDB ID: retro_mluc_1573

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429864:572000..573089(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000017740
• Aliases: None
• Description: None

Sequence

>retro_mluc_1573
TGTGATACCTCATAACACAAGGTGCTGGCAGTGTCAAGTGTCCTCAGTCTCTGCTTTATTTTGCTGCTAAATTCAGCCTG
AGTGTCGCTGATGCATCCAGAAAGCTCTGCGGCTACTCAAAAGCCTTGGGGTACACTGTCTTTCACATGAAGATAGCTGT
GGACTTCAGCATTCTAGAGATTCAGAAGGAATTGGTGCGTCGGTACTGCCAGCACCGTGAGGAAGAGCCCCAGCTATCTA
TGCTGACCTCAGCCTACCCTGGCTGAGTTTGATATGCAGAGAGTGTGCTGGGTCACCCCATCACCCCCCACCTCTGCATG
GCCAAGTCTCCCCAGCAGAACATGGGCTCTCTGGTGTAGGATTACCTCACCAGATTGGAGAACCTGTCCCTAGGCACAGA
CAAGATTTTCCAAGTCATTGTGGCCCATGTTACGACAAGAACTTGGAGGCCCTTTGAGAAGATTTTCCCACAGCTTTGCA
TAGTTCTCAGGGTGCTGACTGCATGTTAACCTCAGGTGAAATTGTCCAGATAATGGAGCAAAGTGACCTTGCCTCAACTG
ACACCACCATGGACACTCTGTTTGGAGACATGAAGGAGGAGGAGGTAAGGCTCCACGAGGGTGCCTGCTCCGGCGGGTAC
CAGGCACAAATCTTCAGGCACATGGCCAAAGCTCTGTTCAACAAGGACATGGGGGTGCTCACCTACTGCACCCTGATGAA
CAAAGACTTCCAGGAGGTCACCCTTGAAAGGGACGGAGAAATTCTGCTATGCTTTAAGGCTGCTTATGGCTTTTGGAATA
TCCAGAAGTGATACTGAAGCTGTAGAGCGGCAACTCCCCTGACACTTCGTGGAGGTCCTAGCCTGCGCTGGGGATGCCTA
AGCGACAGGGGCCAGGACCAGGTGGAGGGCGGGCTTGCAGACAGGGCACTGCTGCGGCAGATGGAAGGCATCTACACTGC
CATCCCGGTGTGGCCCCCGGAGACCAGCGCCCATGTGCAGAAGCTGTACCAGGAGTGACTGGCGGGGTGGACTGCCCCCG
GGCCCAGACAGACCTGCACACCACCTAGCAGGGCCCAGGGCAGCCTGCC

Alignment

ORF - retro_mluc_1573 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 73.6 %
• Parental protein coverage: 79.91 %
• Number of stop codons detected: 9
• Number of frameshifts detected: 6

Retrocopy - Parental Gene Alignment:

Parental  CDASQHKVLAVSV-CPQSLPYFAAKFSLSVTDASRRLCGFLKSLGVHYVFDMTIAADFSILESQKEFVRR
          CD.S.HKVLAVS..CPQSL.YFAAKFSLSV.DASR.LCG..K.LG...VF.M.IA.DFSILE.QKE.VRR
Retrocopy CDTS*HKVLAVSS<CPQSLLYFAAKFSLSVADASRKLCGYSKALG-YTVFHMKIAVDFSILEIQKELVRR

Parental  YRQHREEEPRLPMLTSACPGWVRYAERVLGHPITPHLCTAKSPQQIMGSLVKDYFARRQNLS--PDKIFH
          Y.QHREEEP.L.MLTSA.PG.V.YAE.VLGHPITPHLC.AKSPQQ.MGSLV.DY..R..NLS...DKIF.
Retrocopy YCQHREEEPQLSMLTSAYPG*V*YAESVLGHPITPHLCMAKSPQQNMGSLV*DYLTRLENLSLGTDKIFQ

Parental  VIVA-PCYDKKLEALREDVPTALHSSRGADCVLTSGEIVQLMEQSDLSADDALVDTLLTRFGDVKEEEVR
          VIVA.PCYDK.LEAL.ED.PTALHSS.GADC.LTSGEIVQ.MEQSDL...D...DTL...FGD.KEEEVR
Retrocopy VIVA<PCYDKNLEAL*EDFPTALHSSQGADCMLTSGEIVQIMEQSDLASTDTTMDTL---FGDMKEEEVR

Parental  RHEGASSDGYLAHIFRHAAKELFNEDVGALTYRSLRNKDFQEVTLERDGEVLLRFAAAYGFRNIQ-NVVL
          .HEGA.S.GY.A.IFRH.AK.LFN.D.G.LTY..L.NKDFQEVTLERDGE.LL.F.AAYGF.NIQ..V.L
Retrocopy LHEGACSGGYQAQIFRHMAKALFNKDMGVLTYCTLMNKDFQEVTLERDGEILLCFKAAYGFWNIQ<EVIL

Parental  KLKRG-KFPYHFVEVLACAG-GCLSGRGQAQAEDGRADRALLRQMEGIYAAIPVRPPETSAHVQELYQEW
          KL..G...P.HFVEVLACAG.GCLS.RGQ.Q.E.G.ADRALLRQMEGIY.AIPV.PPETSAHVQ.LYQE.
Retrocopy KL*SG<QLP*HFVEVLACAG<GCLSDRGQDQVEGGLADRALLRQMEGIYTAIPVWPPETSAHVQKLYQE*

Parental  L-GGADSPRPRA-LHTAYQGPGQSA
          L.GG.D.PR....LHT..QGPGQ.A
Retrocopy L<GGVDCPRAQTDLHTT*QGPGQPA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1573 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 27 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000018178	1 retrocopy	retro_btau_820,
Canis familiaris	ENSCAFG00000012976	1 retrocopy	retro_cfam_659,
Dasypus novemcinctus	ENSDNOG00000011246	1 retrocopy	retro_dnov_1757,
Echinops telfairi	ENSETEG00000009329	1 retrocopy	retro_etel_999,
Myotis lucifugus	ENSMLUG00000017740	23 retrocopies	retro_mluc_1006, retro_mluc_1012, retro_mluc_1083, retro_mluc_1091, retro_mluc_1124, retro_mluc_1256, retro_mluc_1282, retro_mluc_1457, retro_mluc_1573 , retro_mluc_1622, retro_mluc_1632, retro_mluc_1700, retro_mluc_1718, retro_mluc_1898, retro_mluc_1973, retro_mluc_2365, retro_mluc_671, retro_mluc_688, retro_mluc_817, retro_mluc_825, retro_mluc_877, retro_mluc_879, retro_mluc_982,