Parental gene:

Atp6v1g1, ENSMUSG00000039105

Aliases:Atp6v1g1, 1810024D14Rik, AA960677, ATP6J, Atp6g1, VAG1, Vma10
Description:ATPase, H+ transporting, lysosomal V1 subunit G1 [Source:MGI Symbol;Acc:MGI:1913540]
Organism:Mouse (Mus musculus)
Coordinates:4:63544771..63550750(+)


>ENSMUSG00000039105
ATGGCGAGTCAGTCGCAGGGCATCCAGCAGCTACTGCAGGCCGAGAAGCGGGCCGCCGAGAAGGTGTCCGAGGCCCGCAA
GCGAAAGAACCGGAGGCTGAAGCAGGCCAAAGAAGAAGCCCAGGCTGAAATTGAACAGTACCGCCTGCAGAGGGAGAAGG
AGTTCAAGGCCAAGGAAGCTGCGGCATTGGGCTCCCATGGCAGCTGCAGCAGTGAGGTGGAAAAGGAGACCCGGGAGAAG
ATGACCGTCCTCCAGAACTACTTCGAGCAGAACAGGGATGAAGTCCTGGATAACCTCTTGGCCTTTGTGTGTGACATCCG
GCCGGAAATCCATGAAAACTACCGCATAAACGGATAG

Library Parental gene expression (RPM)
SRP007412_brain 18 .88 RPM
SRP007412_cerebellum 16 .98 RPM
SRP007412_heart 27 .43 RPM
SRP007412_kidney 41 .35 RPM
SRP007412_liver 15 .89 RPM
SRP007412_testis 41 .81 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000012509 possible_ortholog 3 retrogenes
retro_amel_1053, retro_amel_376, retro_amel_999,
Callithrix jacchus ENSCJAG00000020461 possible_ortholog 3 retrogenes
retro_cjac_1788, retro_cjac_2513, retro_cjac_76,
Cavia porcellus ENSCPOG00000000763 possible_ortholog 5 retrogenes
retro_cpor_1523, retro_cpor_204, retro_cpor_688, retro_cpor_742, retro_cpor_852,
Dasypus novemcinctus ENSDNOG00000008083 ortholog_one2many 15 retrogenes
retro_dnov_1173, retro_dnov_1447, retro_dnov_1475, retro_dnov_1504, retro_dnov_1588, retro_dnov_1645, retro_dnov_193, retro_dnov_1998, retro_dnov_2179, retro_dnov_218, retro_dnov_2416, retro_dnov_245, retro_dnov_336, retro_dnov_479, retro_dnov_790,
Dipodomys ordii ENSDORG00000014850 ortholog_one2many 5 retrogenes
retro_dord_434, retro_dord_466, retro_dord_614, retro_dord_640, retro_dord_749,
Equus caballus ENSECAG00000011155 ortholog_one2many 1 retrogene
retro_ecab_816,
Echinops telfairi ENSETEG00000008080 ortholog_one2many 3 retrogenes
retro_etel_350, retro_etel_594, retro_etel_996,
Felis catus ENSFCAG00000000160 possible_ortholog 2 retrogenes
retro_fcat_1614, retro_fcat_402,
Homo sapiens ENSG00000136888 possible_ortholog 3 retrogenes
retro_hsap_3198, retro_hsap_4049, retro_hsap_763,
Gorilla gorilla ENSGGOG00000004011 possible_ortholog 4 retrogenes
retro_ggor_1331, retro_ggor_2215, retro_ggor_2717, retro_ggor_632,
Loxodonta africana ENSLAFG00000013437 ortholog_one2many 2 retrogenes
retro_lafr_1002, retro_lafr_39,
Microcebus murinus ENSMICG00000015368 ortholog_one2many 3 retrogenes
retro_mmur_1217, retro_mmur_1259, retro_mmur_755,
Myotis lucifugus ENSMLUG00000008657 ortholog_many2many 2 retrogenes
retro_mluc_373, retro_mluc_839,
Macaca mulatta ENSMMUG00000004899 possible_ortholog 4 retrogenes
retro_mmul_1783, retro_mmul_2018, retro_mmul_2046, retro_mmul_331,
Monodelphis domestica ENSMODG00000019574 ortholog_one2many 1 retrogene
retro_mdom_1675,
Mustela putorius furo ENSMPUG00000001653 possible_ortholog 3 retrogenes
retro_mputfur_1338, retro_mputfur_922, retro_mputfur_994,
Nomascus leucogenys ENSNLEG00000016833 possible_ortholog 2 retrogenes
retro_nleu_1151, retro_nleu_3045,
Oryctolagus cuniculus ENSOCUG00000026252 possible_ortholog 3 retrogenes
retro_ocun_1411, retro_ocun_368, retro_ocun_639,
Otolemur garnettii ENSOGAG00000010103 ortholog_one2many 3 retrogenes
retro_ogar_1824, retro_ogar_2822, retro_ogar_342,
Pan troglodytes ENSPTRG00000021290 possible_ortholog 2 retrogenes
retro_ptro_2248, retro_ptro_2744,
Pteropus vampyrus ENSPVAG00000008334 ortholog_one2many 1 retrogene
retro_pvam_1432,
Rattus norvegicus ENSRNOG00000008163 ortholog_one2many 2 retrogenes
retro_rnor_1246, retro_rnor_676,
Ictidomys tridecemlineatus ENSSTOG00000015857 possible_ortholog 5 retrogenes
retro_itri_1102, retro_itri_1235, retro_itri_1281, retro_itri_1340, retro_itri_1669,
Tupaia belangeri ENSTBEG00000010985 possible_ortholog 2 retrogenes
retro_tbel_2147, retro_tbel_786,
Tarsius syrichta ENSTSYG00000011474 possible_ortholog 3 retrogenes
retro_tsyr_1865, retro_tsyr_2141, retro_tsyr_614,
Tursiops truncatus ENSTTRG00000015203 ortholog_one2many 2 retrogenes
retro_ttru_125, retro_ttru_480,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_819 82.24 89.83
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2. retro_mmus_2028 98.31 100.00
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3. retro_mmus_2784 55.66 89.83
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4. retro_mmus_2787 57.55 89.83
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5. retro_mmus_3316 74.17 100.00
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Download FASTA sequences of all ENSMUSG00000039105 retrocopies