Parental gene:

RPL34, ENSETEG00000003715

Aliases:None
Description:ribosomal protein L34 [Source:HGNC Symbol;Acc:10340]
Organism:Lesser hedgehog tenrec (Echinops telfairi)
Coordinates:GeneScaffold_2060:1202..1844(+)


>ENSETEG00000003715
ATGGTTCAGCGTCTGACCTACCGGCGTAGGCTGTCCTACAATACAGCCTCTAACAAAACTAGGCTGTCCCGAACCCCTGG
TAACAGAATTGTTTACTTATATACAAAAAAGGTTGGGAAAGCGCCAAAATCTGCATGCGGTGTGTGCCCAGGCCGACTTC
GAGGGGTCCGTGCTGTGAGACCCAAAGTTCTCATGAGGTTGTCCAAAACCAAAAAACATGTCAGCAGGGCTTATGGTGGG
TCCATGTGCGCTAAATGTGTCCGAGAC

Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000015993 possible_ortholog 4 retrogenes
retro_cjac_130, retro_cjac_293, retro_cjac_83, retro_cjac_99,
Equus caballus ENSECAG00000019719 possible_ortholog 1 retrogene
retro_ecab_58,
Gadus morhua ENSGMOG00000009982 ortholog_one2one 1 retrogene
retro_gmor_31,
Macropus eugenii ENSMEUG00000009361 ortholog_one2one 3 retrogenes
retro_meug_1012, retro_meug_1754, retro_meug_1775,
Myotis lucifugus ENSMLUG00000000464 possible_ortholog 4 retrogenes
retro_mluc_125, retro_mluc_1372, retro_mluc_1427, retro_mluc_1847,
Macaca mulatta ENSMMUG00000011901 possible_ortholog 1 retrogene
retro_mmul_162,
Monodelphis domestica ENSMODG00000020601 ortholog_one2one 3 retrogenes
retro_mdom_1690, retro_mdom_774, retro_mdom_836,
Mustela putorius furo ENSMPUG00000008873 possible_ortholog 17 retrogenes
retro_mputfur_1028, retro_mputfur_1095, retro_mputfur_1130, retro_mputfur_1170, retro_mputfur_12, retro_mputfur_1242, retro_mputfur_1305, retro_mputfur_1480, retro_mputfur_1501, retro_mputfur_360, retro_mputfur_378, retro_mputfur_475, retro_mputfur_517, retro_mputfur_557, retro_mputfur_562, retro_mputfur_852, retro_mputfur_923,
Mus musculus ENSMUSG00000062006 possible_ortholog 26 retrogenes
retro_mmus_1064, retro_mmus_1283, retro_mmus_1513, retro_mmus_1603, retro_mmus_1658, retro_mmus_2115, retro_mmus_2116, retro_mmus_215, retro_mmus_2154, retro_mmus_2266, retro_mmus_2290, retro_mmus_2476, retro_mmus_2595, retro_mmus_2695, retro_mmus_2748, retro_mmus_2903, retro_mmus_2960, retro_mmus_3041, retro_mmus_3381, retro_mmus_3524, retro_mmus_467, retro_mmus_609, retro_mmus_640, retro_mmus_817, retro_mmus_823, retro_mmus_882,
Nomascus leucogenys ENSNLEG00000012934 possible_ortholog 20 retrogenes
retro_nleu_1219, retro_nleu_1322, retro_nleu_1495, retro_nleu_150, retro_nleu_1617, retro_nleu_1703, retro_nleu_1839, retro_nleu_1915, retro_nleu_2101, retro_nleu_2260, retro_nleu_2268, retro_nleu_2575, retro_nleu_263, retro_nleu_2911, retro_nleu_2916, retro_nleu_2966, retro_nleu_3073, retro_nleu_38, retro_nleu_553, retro_nleu_861,
Ornithorhynchus anatinus ENSOANG00000007856 ortholog_one2one 1 retrogene
retro_oana_92,
Otolemur garnettii ENSOGAG00000006774 possible_ortholog 1 retrogene
retro_ogar_44,
Pongo abelii ENSPPYG00000014988 possible_ortholog 18 retrogenes
retro_pabe_1171, retro_pabe_1351, retro_pabe_1609, retro_pabe_1630, retro_pabe_1859, retro_pabe_2338, retro_pabe_2560, retro_pabe_2784, retro_pabe_2931, retro_pabe_3330, retro_pabe_3352, retro_pabe_3375, retro_pabe_3788, retro_pabe_385, retro_pabe_420, retro_pabe_566, retro_pabe_77, retro_pabe_827,
Pelodiscus sinensis ENSPSIG00000003295 ortholog_one2one 1 retrogene
retro_psin_60,
Rattus norvegicus ENSRNOG00000016387 possible_ortholog 36 retrogenes
retro_rnor_1031, retro_rnor_1083, retro_rnor_1101, retro_rnor_1172, retro_rnor_1376, retro_rnor_1550, retro_rnor_1575, retro_rnor_1630, retro_rnor_1694, retro_rnor_1695, retro_rnor_1696, retro_rnor_1775, retro_rnor_1803, retro_rnor_1844, retro_rnor_1857, retro_rnor_2029, retro_rnor_2090, retro_rnor_2095, retro_rnor_2139, retro_rnor_2230, retro_rnor_2565, retro_rnor_2578, retro_rnor_2597, retro_rnor_2621, retro_rnor_2651, retro_rnor_2794, retro_rnor_282, retro_rnor_367, retro_rnor_500, retro_rnor_575, retro_rnor_605, retro_rnor_617, retro_rnor_672, retro_rnor_848, retro_rnor_866, retro_rnor_869,
Sarcophilus harrisii ENSSHAG00000001357 ortholog_one2many 1 retrogene
retro_shar_799,
Sarcophilus harrisii ENSSHAG00000002052 ortholog_one2many 3 retrogenes
retro_shar_131, retro_shar_324, retro_shar_419,
Tupaia belangeri ENSTBEG00000003574 ortholog_one2one 24 retrogenes
retro_tbel_1109, retro_tbel_1298, retro_tbel_1337, retro_tbel_1532, retro_tbel_1781, retro_tbel_1857, retro_tbel_1941, retro_tbel_213, retro_tbel_2162, retro_tbel_2165, retro_tbel_2372, retro_tbel_2391, retro_tbel_2601, retro_tbel_279, retro_tbel_335, retro_tbel_3606, retro_tbel_3984, retro_tbel_4059, retro_tbel_4398, retro_tbel_657, retro_tbel_74, retro_tbel_901, retro_tbel_974, retro_tbel_983,
Xenopus tropicalis ENSXETG00000021095 ortholog_one2many 1 retrogene
retro_xtro_5,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_etel_74 88.89 100.00
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2. retro_etel_106 93.18 97.75
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3. retro_etel_107 60.67 100.00
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4. retro_etel_124 87.91 100.00
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5. retro_etel_145 67.39 100.00
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6. retro_etel_158 76.92 85.39
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7. retro_etel_170 71.28 100.00
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8. retro_etel_179 87.84 83.15
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9. retro_etel_217 67.11 85.39
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10. retro_etel_273 97.75 100.00
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11. retro_etel_274 67.82 93.26
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12. retro_etel_299 53.09 88.76
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13. retro_etel_327 54.22 93.26
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14. retro_etel_344 67.03 97.75
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15. retro_etel_362 71.43 100.00
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16. retro_etel_380 64.18 73.03
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17. retro_etel_388 91.01 100.00
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18. retro_etel_416 55.42 89.89
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19. retro_etel_418 73.33 98.88
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20. retro_etel_429 88.76 98.88
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21. retro_etel_464 67.06 95.51
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22. retro_etel_494 75.00 95.51
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23. retro_etel_533 92.13 100.00
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24. retro_etel_726 68.66 75.28
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25. retro_etel_756 71.11 98.88
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26. retro_etel_759 56.41 85.39
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27. retro_etel_774 67.74 100.00
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28. retro_etel_863 67.95 87.64
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29. retro_etel_870 62.35 94.38
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30. retro_etel_914 72.86 76.40
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31. retro_etel_927 71.60 89.89
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32. retro_etel_938 68.18 97.75
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33. retro_etel_974 63.64 71.91
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34. retro_etel_1125 80.00 100.00
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35. retro_etel_1140 92.13 100.00
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36. retro_etel_1182 70.79 100.00
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37. retro_etel_1187 72.22 77.53
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38. retro_etel_1232 71.43 78.65
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39. retro_etel_1303 64.47 83.15
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40. retro_etel_1324 82.26 69.66
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41. retro_etel_1483 87.65 89.89
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42. retro_etel_1515 72.22 98.88
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43. retro_etel_1545 88.04 100.00
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44. retro_etel_1547 100.00 100.00
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45. retro_etel_1745 70.45 97.75
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46. retro_etel_1767 68.13 100.00
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47. retro_etel_1795 60.00 86.52
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48. retro_etel_1890 62.22 100.00
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49. retro_etel_1967 91.11 100.00
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50. retro_etel_1973 72.22 100.00
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51. retro_etel_2066 76.40 100.00
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52. retro_etel_2094 59.15 77.53
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53. retro_etel_2191 60.32 69.66
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Download FASTA sequences of all ENSETEG00000003715 retrocopies