RetrogeneDB ID:

retro_nleu_1839

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397312.1:6051944..6052357(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL34
Ensembl ID:ENSNLEG00000012934
Aliases:None
Description:ribosomal protein L34 [Source:HGNC Symbol;Acc:10340]


Retrocopy-Parental alignment summary:






>retro_nleu_1839
TTAACAAGCAGAGTAGAAAACACAGCAACTGCTTTTCTCCGGGAACATTGTCTACAGTCACTCAGAATGGTCCAGTGTAT
GACATACAATCATCAGCTTTCCTACAATACAGCTTTCAACAGAAATAGGGTGTCCCCAGCCCCTGGCAATAGAACTGTTT
ACCAACCAAGAAGGTTGGGAAAGACACAAAATTGGCATGTGGCATGTGCCCAGACAGACTTTGAGGGGTTTGTGCCGTGA
GATTTAAAGTTCTTATAAGGTTGTCTACAATGAAAAAACATGTCAGCAGGCCCTATCGTGGTCCAATGTGTGCTAAATGA
GTCCATGACAGGATCAAGGGTGCCTTCCTTATCAAGAAGCAGAAAATCATTGTGAAAGTGTTGAAAGCACAAGCACAGAG
TCAAAAAGCTAAA

ORF - retro_nleu_1839 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 61.43 %
Parental protein coverage: 59.91 %
Number of stop codons detected: 2
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalLTFELAKAFSFLFRGRWLQVLRMVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKA-PKSACG
LT...........R...LQ.LRMVQ..TY...LSYNTA.N..R.S..PGNR.VY......GK...K.ACG
RetrocopyLTSRVENTATAFLREHCLQSLRMVQCMTYNHQLSYNTAFNRNRVSPAPGNRTVY-QPRRLGKT<TKLACG
ParentalVCPGRLRGVRAVRPKVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVLKAQAQSQKAK
.CP.RL.GV.AVR.KVL.RLS..KKHVSR.Y.G.MCAK.V.DRIK.AFLI..QKI.VKVLKAQAQSQKAK
RetrocopyMCPDRL*GVCAVRFKVLIRLSTMKKHVSRPYRGPMCAK*VHDRIKGAFLIKKQKIIVKVLKAQAQSQKAK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Nomascus leucogenys was not studied using RNA-Seq expression data.