Parental gene:

SEPT7, ENSCJAG00000012276

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:8:3817919..3922123(+)


>ENSCJAG00000012276
ATGTCGGTCAGTGCGAGATCCGCTGCTGCTGAGGAGAGGAGCGTCAACAGCAGCACCATGGTTTGTCAGCAACAGAAGAA
CCTTGAAGGCTATGTGGGATTTGCCAATCTCCCAAATCAAGTATACAGAAAATCAGTGAAGAGAGGGTTTGAATTCACGC
TTATGGTAGTGGGTGAATCTGGATTGGGAAAGTCGACATTAATCAACTCATTGTTCCTCACAGATTTGTATTCTCCAGAG
TATCCAGGTCCTTCTCATAGAATTAAAAAGACTGTACAGGTGGAGCAATCCAAAGTTTTAATCAAAGAAGGTGGTGTTCA
GTTGCTGCTGACAATAGTTGATACCCCAGGATTTGGAGATGCAGTGGATAACAGTAATTGCTGGCAGCCTGTTATCGACT
ACATCGATAGTAAATTTGAGGACTACCTAAATGCAGAATCTCGAGTGAACAGACGCCAGATGCCTGATAATAGGGTGCAG
TGTTGTTTATACTTCATTGCTCCTTCAGGACATGGACTTAAACCATTGGATATTGAGTTTATGAAGCGTTTGCACGAAAA
AGTGAATATCATCCCACTTATTGCCAAAGCAGACACACTCACACCAGAGGAATGCCAACAGTTTAAAAAACAGATAATGA
AAGAAATCCAAGAACATAAAATTAAAATATATGAATTTCCAGAAACAGATGATGAAGAAGAAAATAAACTTGTTAAAAAG
ATAAAGGACCGTTTACCTCTTGCTGTGGTAGGTAGTAATACTATCATTGAAGTTAATGGCAAAAGGGTCAGAGGAAGGCA
GTATCCTTGGGGTGTTGCTGAAGTTGAAAATGGTGAACATTGTGATTTTACAATTTTAAGAAATATGTTGATAAGAACAC
ACATGCAGGACTTGAAAGATGTTACTAATAATGTTCACTATGAGAACTACAGAAGCAGAAAACTGGCGGCTGTGACTTAC
AATGGAGTTGATAACAACAAGAATAAGGGACAGCTGACTAAGAGCCCTCTGGCACAAATGGAAGAAGAAAGAAGGGAGCA
TGTAGCTAAGATGAAGAAGATGGAGATGGAGATGGAGCAGGTGTTTGAGATGAAGGTCAAAGAAAAAGTTCAGAAACTGA
AGGACTCTGAAGCCGAGCTCCAGCGGCGCCATGAGCAAATGAAAAAGAATTTGGAAGCACAGCACAAAGAATTAGAGGAA
AAACGTCGTCAGTTTGAGGATGAGAAAGCAAACTGGGAAGCTCAACAGCGTATTTTAGAACAACAGAACTCTTCAAGAAC
CTTGGAAAAGAACAAGAAGAAAGGGAAGATCTTTTAA

Library Parental gene expression (RPM)
SRP051959_spleen 67 .21 RPM
SRP051959_skeletal_muscle 38 .63 RPM
SRP051959_lymph_node 68 .10 RPM
SRP051959_lung 78 .86 RPM
SRP051959_liver 31 .43 RPM
SRP051959_kidney 54 .07 RPM
SRP051959_heart 72 .07 RPM
SRP051959_colon 43 .27 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000006122 within_species_paralog 1 retrogene
retro_cjac_1501,
Callithrix jacchus ENSCJAG00000014744 other_paralog 1 retrogene
retro_cjac_2336,
Callithrix jacchus ENSCJAG00000017754 other_paralog 3 retrogenes
retro_cjac_1736, retro_cjac_2879, retro_cjac_828,
Equus caballus ENSECAG00000022693 possible_ortholog 1 retrogene
retro_ecab_650,
Echinops telfairi ENSETEG00000015624 ortholog_one2one 3 retrogenes
retro_etel_1263, retro_etel_282, retro_etel_517,
Homo sapiens ENSG00000122545 ortholog_one2one 2 retrogenes
retro_hsap_3810, retro_hsap_4202,
Gorilla gorilla ENSGGOG00000001175 ortholog_one2one 1 retrogene
retro_ggor_2816,
Monodelphis domestica ENSMODG00000021167 ortholog_one2many 1 retrogene
retro_mdom_1672,
Nomascus leucogenys ENSNLEG00000001673 ortholog_one2one 1 retrogene
retro_nleu_2152,
Otolemur garnettii ENSOGAG00000006015 ortholog_one2one 1 retrogene
retro_ogar_1193,
Pongo abelii ENSPPYG00000017639 possible_ortholog 1 retrogene
retro_pabe_3438,
Pan troglodytes ENSPTRG00000019080 ortholog_one2one 2 retrogenes
retro_ptro_2585, retro_ptro_2853,
Rattus norvegicus ENSRNOG00000006545 ortholog_one2one 9 retrogenes
retro_rnor_1424, retro_rnor_1425, retro_rnor_1426, retro_rnor_1427, retro_rnor_1428, retro_rnor_1431, retro_rnor_1445, retro_rnor_1446, retro_rnor_821,
Sarcophilus harrisii ENSSHAG00000003788 ortholog_one2many 1 retrogene
retro_shar_258,
Ictidomys tridecemlineatus ENSSTOG00000021378 ortholog_one2one 3 retrogenes
retro_itri_1332, retro_itri_1736, retro_itri_1771,
Tursiops truncatus ENSTTRG00000016197 possible_ortholog 1 retrogene
retro_ttru_329,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1259 90.70 97.49
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2. retro_cjac_3809 81.27 89.32
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Download FASTA sequences of all ENSCJAG00000012276 retrocopies