Parental gene:

SEPT11, ENSCJAG00000014744

Aliases:SEPT11, septin-11
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:3:117563198..117651486(-)


>ENSCJAG00000014744
ATGGAGGAGAGGAAGGGAGCTTATGTGCTGAAAAGTTGTAAATATGTTGCATTTATGAATGAAGAGCTTCGAAACTTGTC
TTTGTCTGGCCATGTGGGATTTGACAGCCTCCCTGACCAGCTGGTCAACAAGTCTACTTCTCAAGGATTCTGTTTCAACA
TCCTTTGTGTTGGTGAGACAGGCATTGGCAAATCCACATTAATGGACACTTTGTTCAACACCAAATTTGAAAGTGACCCA
GCTACTCACAATGAACCAGGTGTCCGGTTAAAAGCCAGAAGTTACGAGCTTCAGGAAAGCAATGTACGGCTGAAGTTAAC
CATCGTTGACACCGTGGGATTTGGAGACCAGATAAATAAAGATGACAGCTATAAGCCGATAGTAGAATATATTGACGCCC
AGTTCGAGGCCTACCTGCAAGAGGAACTGAAGATTAAACGATCTCTCTTCAACTACCATGACACGAGGATCCATGCCTGC
CTCTACTTTATTGCCCCTACTGGACATTCACTAAAGTCCCTGGATCTGGTCACCATGAAAAAGCTGGACAGTAAGGTGAA
CATCATCCCAATAATTGCAAAAGCTGACACCATTGCCAAGAACGAGCTGCACAAATTTAAGAGCAAGATCATGAGTGAAC
TAGTCAGCAATGGGGTCCAGATATATCAGTTCCCCACTGATGAGGAAACAGTGGCAGAGATTAACGCAACAATGAGCGTC
CATCTCCCATTTGCAGTGGTTGGCAGCACCGAAGAGGTGAAGATTGGCAACAAGATGGCAAAGGCCAGGCAGTACCCTTG
GGGTGTGGTGCAGGTCGAGAATGAAAACCATTGTGATTTTGTGAAACTTCGAGAGATGCTGATCCGGGTAAACATGGAGG
ACTTGCGAGAGCAGACTCACACCCGCCACTACGAGCTGTACCGACGCTGTAAGCTTGAAGAGATGGGGTTCAAGGACACC
GACCCTGACAGCAAACCCTTCAGTCTTCAGGAGACATATGAAGCAAAAAGGAATGAATTCCTGGGAGAACTGCAGAAGAA
AGAAGAAGAAATGAGACAAATGTTTGTTATGAGAGTGAAGGAGAAAGAAGCTGAACTTAAAGAGGCAGAGAAAGAGCTTC
ACGAGAAGTTTGACCTTCTAAAGCGGACACACCAAGAAGAAAAGAAGAAAGTGGAAGATAAGAAGAAGGAGCTTGAGGAG
GAGGTGAACAACTTCCAGAAGAAGAAAGCAGCGGCTCAGTTACTACAGTCCCAGGCCCAACAATCTGGGGCCCAGCAAAC
CAAGAAGGACAAGGATAAGAAAAATGCAAGCTTCACATAA

Library Parental gene expression (RPM)
SRP051959_spleen 33 .91 RPM
SRP051959_skeletal_muscle 19 .24 RPM
SRP051959_lymph_node 21 .25 RPM
SRP051959_lung 27 .35 RPM
SRP051959_liver 12 .67 RPM
SRP051959_kidney 33 .59 RPM
SRP051959_heart 21 .52 RPM
SRP051959_colon 20 .75 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000003906 ortholog_one2one 1 retrogene
retro_chof_1543,
Callithrix jacchus ENSCJAG00000006122 other_paralog 1 retrogene
retro_cjac_1501,
Callithrix jacchus ENSCJAG00000012276 other_paralog 2 retrogenes
retro_cjac_1259, retro_cjac_3809,
Callithrix jacchus ENSCJAG00000017754 within_species_paralog 3 retrogenes
retro_cjac_1736, retro_cjac_2879, retro_cjac_828,
Monodelphis domestica ENSMODG00000011825 ortholog_one2one 1 retrogene
retro_mdom_224,
Oryctolagus cuniculus ENSOCUG00000001289 ortholog_one2one 1 retrogene
retro_ocun_1758,
Otolemur garnettii ENSOGAG00000005210 ortholog_one2one 1 retrogene
retro_ogar_2831,
Pan troglodytes ENSPTRG00000016192 ortholog_one2one 1 retrogene
retro_ptro_2753,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2336 94.17 100.00
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Download FASTA sequences of all ENSCJAG00000014744 retrocopies