Parental gene: | SEPT7, ENSPTRG00000019080 |
| Aliases: | SEPT7, CDC10 |
| Description: | Pan troglodytes septin 7 (SEPT7), transcript variant 2, mRNA. [Source:RefSeq mRNA;Acc:NM_001197121] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 7:34363151..34467558(+) |
>ENSPTRG00000019080
ATGTCGGTCAGTGCGAGATCCGCTGCTGCTGAGGAGAGGAGCGTCAACAGCAGCACCATGGAGGTTGCCCAACAGAAGAA
CCTTGAAGGCTATGTGGGATTTGCCAATCTCCCAAATCAAGTATACAGAAAATCGGTGAAGAGAGGTTTTGAATTCACGC
TTATGGTAGTGGGTGAATCTGGATTGGGAAAGTCGACATTAATCAACTCATTATTCCTCACAGATTTGTATTCTCCAGAG
TATCCAGGTCCTTCTCATAGAATTAAAAAGACTGTACAGGTGGAACAATCCAAAGTTTTAATCAAAGAAGGTGGTGTTCA
GTTGCTGCTCACAATAGTTGATACCCCAGGATTTGGAGATGCAGTGGATAATAGTAATTGCTGGCAGCCTGTTATCGACT
ACATTGATAGTAAATTTGAGGACTACCTAAATGCAGAATCACGAGTGAACAGACGTCAGATGCCTGATAACAGGGTGCAG
TGTTGTTTATACTTCATTGCTCCTTCAGGACATGGACTTAAACCATTGGATATTGAGTTTATGAAGCGTTTGCATGAAAA
AGTGAATATCATCCCACTTATTGCCAAAGCAGACACACTCACACCAGAGGAATGCCAACAGTTTAAAAAACAGATAATGA
AAGAAATCCAAGAACATAAAATTAAAATATACGAATTTCCAGAAACAGATGATGAAGAAGAAAATAAACTTGTTAAAAAG
ATAAAGGACCGTTTACCTCTTGCTGTGGTAGGTAGTAATACTATCATTGAAGTTAATGGCAAAAGGGTCAGAGGAAGGCA
GTATCCTTGGGGTGTTGCTGAAGTTGAAAATGGTGAACATTGTGATTTTACAATCCTAAGAAATATGTTGATAAGAACAC
ACATGCAGGACTTGAAAGATGTTACTAATAATGTCCACTATGAGAACTACAGAAGCAGAAAACTTGCAGCTGTGACTTAT
AATGGAGTTGATAACAACAAGAATAAAGGGCAGCTGACTAAGAGCCCTCTGGCACAAATGGAAGAAGAAAGAAGGGAGCA
TGTAGCTAAAATGAAGAAGATGGAGATGGAGATGGAGCAGGTGTTTGAGATGAAGGTCAAAGAAAAAGTTCAAAAACTGA
AGGACTCTGAAGCTGAGCTCCAGCGGCGCCATGAGCAAATGAAAAAGAATTTGGAAGCGCAGCACAAAGAATTGGAGGAA
AAACGTCGTCAGTTTGAGGATGAGAAAGCAAACTGGGAAGCTCAACAACGTATTTTAGAACAACAGAACTCTTCAAGAAC
CTTGGAAAAGAACAAGAAGAAAGGGAAGATCTTTTAA
ATGTCGGTCAGTGCGAGATCCGCTGCTGCTGAGGAGAGGAGCGTCAACAGCAGCACCATGGAGGTTGCCCAACAGAAGAA
CCTTGAAGGCTATGTGGGATTTGCCAATCTCCCAAATCAAGTATACAGAAAATCGGTGAAGAGAGGTTTTGAATTCACGC
TTATGGTAGTGGGTGAATCTGGATTGGGAAAGTCGACATTAATCAACTCATTATTCCTCACAGATTTGTATTCTCCAGAG
TATCCAGGTCCTTCTCATAGAATTAAAAAGACTGTACAGGTGGAACAATCCAAAGTTTTAATCAAAGAAGGTGGTGTTCA
GTTGCTGCTCACAATAGTTGATACCCCAGGATTTGGAGATGCAGTGGATAATAGTAATTGCTGGCAGCCTGTTATCGACT
ACATTGATAGTAAATTTGAGGACTACCTAAATGCAGAATCACGAGTGAACAGACGTCAGATGCCTGATAACAGGGTGCAG
TGTTGTTTATACTTCATTGCTCCTTCAGGACATGGACTTAAACCATTGGATATTGAGTTTATGAAGCGTTTGCATGAAAA
AGTGAATATCATCCCACTTATTGCCAAAGCAGACACACTCACACCAGAGGAATGCCAACAGTTTAAAAAACAGATAATGA
AAGAAATCCAAGAACATAAAATTAAAATATACGAATTTCCAGAAACAGATGATGAAGAAGAAAATAAACTTGTTAAAAAG
ATAAAGGACCGTTTACCTCTTGCTGTGGTAGGTAGTAATACTATCATTGAAGTTAATGGCAAAAGGGTCAGAGGAAGGCA
GTATCCTTGGGGTGTTGCTGAAGTTGAAAATGGTGAACATTGTGATTTTACAATCCTAAGAAATATGTTGATAAGAACAC
ACATGCAGGACTTGAAAGATGTTACTAATAATGTCCACTATGAGAACTACAGAAGCAGAAAACTTGCAGCTGTGACTTAT
AATGGAGTTGATAACAACAAGAATAAAGGGCAGCTGACTAAGAGCCCTCTGGCACAAATGGAAGAAGAAAGAAGGGAGCA
TGTAGCTAAAATGAAGAAGATGGAGATGGAGATGGAGCAGGTGTTTGAGATGAAGGTCAAAGAAAAAGTTCAAAAACTGA
AGGACTCTGAAGCTGAGCTCCAGCGGCGCCATGAGCAAATGAAAAAGAATTTGGAAGCGCAGCACAAAGAATTGGAGGAA
AAACGTCGTCAGTTTGAGGATGAGAAAGCAAACTGGGAAGCTCAACAACGTATTTTAGAACAACAGAACTCTTCAAGAAC
CTTGGAAAAGAACAAGAAGAAAGGGAAGATCTTTTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 197 .21 RPM |
| SRP007412_cerebellum | 131 .13 RPM |
| SRP007412_heart | 101 .46 RPM |
| SRP007412_kidney | 55 .81 RPM |
| SRP007412_liver | 27 .82 RPM |
| SRP007412_testis | 103 .06 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000012276 | ortholog_one2one | 2 retrogenes | |
| Echinops telfairi | ENSETEG00000015624 | ortholog_one2one | 3 retrogenes | |
| Homo sapiens | ENSG00000122545 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000001175 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000021167 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000001673 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000006015 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000017639 | possible_ortholog | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000016192 | other_paralog | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000006545 | ortholog_one2one | 9 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000003788 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000021378 | ortholog_one2one | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_2585 | 90.86 | 87.39 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_2853 | 83.00 | 57.34 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000019080 retrocopies