RetrogeneDB ID: retro_mluc_354

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429769:21128386..21129283(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000025585
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: CDK4
• Ensembl ID: ENSMLUG00000023651
• Aliases: None
• Description: cyclin-dependent kinase 4 [Source:HGNC Symbol;Acc:1773]

Sequence

>retro_mluc_354
TATGAGCCAGTGGCAGAGATTGGTGTTGGTGCCTATGGGACGGTGTACAAGGCCCGTGATCCCCACAGTGGCCACTTTGT
GGCCCTCAAGAGCGTGAGAGTCCCCAGTGGAGGAGGTGCTGGAGGGGCCCTTCCCATCAGCACAGTTCCTGTGGTGGCCT
TACTGCGGCAGCTGGAGGCTTTTGAGCATCCCAATGTTGCCCGGCTGATGGATGTCTGTGCCACTGCCCGAACTGACCAG
GAGACCAAAGCGACCCTGGTGTTTGAGCACGCGGACCAAGACCTAAGGACGTATCTGGACAAGGCACCCCCACCAGGCTT
GCCAATGGAGACCATCAAGGATCTGATGCGCCAGTTTCTAAGAGGCCTGGATTTTCTTCATGCCAATTGCATTGTTCACC
GAGACCTGAAGCCAGAGAATATTCTGGTGACAAGTGATGGGCCAGTCAAGCTGGCTGACTTTGGCCTGGCCAGAATCTAC
AGCTACCGGATGGCACTTACACCTGTGCTTGTTACACTCTGGTACCGTGCTCTGGAAGTTCATCTGCAGTCCACATACGC
AACACCTGTGGACTTGTGGAGTGTTGCCTGTATCTTTGCAGGGATGTTTTGTCAAAAGCCTCTCTTCTGCGGAAACTTTG
AAGCTGACCAATTGGGCAAAATCTTTGACCTGATTGAGCTGCCTCCAGAGGAACATTGGCCCCGAGATGTGTCTCTACCC
CGAGGAGCCTTCCCCCCCAGAGGGCCCTGCCCAGTGCAGTCGGTGAGACCGGAGATGGAGGAGTCTGGAGCACAGCTGCT
GCTGGAGATGCTGACTTTTAACCCACACAAGCGAATCTCTGCCTTCCGAGCCCTGCAGCACTCTCATCTACAAAAGGAAG
AAGGTAACCCAGAGTGA

Alignment

ORF - retro_mluc_354 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 90.94 %
• Parental protein coverage: 98.35 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  YEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGAGGGLPVSTVREVALLRRLEAFEHPNVVRLM
          YEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVP.GGGAGG.LP.STV..VALLR.LEAFEHPNV.RLM
Retrocopy YEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPSGGGAGGALPISTVPVVALLRQLEAFEHPNVARLM

Parental  DVCATARTDRETKVTLVFEHVDQDLRTYLDKAPPPGLPVETIKDLMRQFLRGLDFLHANCIVHRDLKPEN
          DVCATARTD.ETK.TLVFEH.DQDLRTYLDKAPPPGLP.ETIKDLMRQFLRGLDFLHANCIVHRDLKPEN
Retrocopy DVCATARTDQETKATLVFEHADQDLRTYLDKAPPPGLPMETIKDLMRQFLRGLDFLHANCIVHRDLKPEN

Parental  ILVTSSGTVKLADFGLARIYSYQMALTPVVVTLWYRAPEVLLQSTYATPVDLWSVGCIFAEMFRRKPLFC
          ILVTS.G.VKLADFGLARIYSY.MALTPV.VTLWYRA.EV.LQSTYATPVDLWSV.CIFA.MF..KPLFC
Retrocopy ILVTSDGPVKLADFGLARIYSYRMALTPVLVTLWYRALEVHLQSTYATPVDLWSVACIFAGMFCQKPLFC

Parental  GNSEADQLGKIFDLIGLPPEEDWPRDVSLPRGAFPPRGPCPVQSVIPEMEKSGAQLLLEMLTFNPHKRIS
          GN.EADQLGKIFDLI.LPPEE.WPRDVSLPRGAFPPRGPCPVQSV.PEME.SGAQLLLEMLTFNPHKRIS
Retrocopy GNFEADQLGKIFDLIELPPEEHWPRDVSLPRGAFPPRGPCPVQSVRPEMEESGAQLLLEMLTFNPHKRIS

Parental  AFRALQHSYLQKEEGNPE
          AFRALQHS.LQKEEGNPE
Retrocopy AFRALQHSHLQKEEGNPE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_354 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 16 parental genes, and 25 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000007160	1 retrocopy	retro_btau_738,
Canis familiaris	ENSCAFG00000000280	1 retrocopy	retro_cfam_690,
Callithrix jacchus	ENSCJAG00000006697	3 retrocopies	retro_cjac_2163, retro_cjac_2891, retro_cjac_2951,
Cavia porcellus	ENSCPOG00000002670	1 retrocopy	retro_cpor_457,
Dasypus novemcinctus	ENSDNOG00000014245	1 retrocopy	retro_dnov_145,
Felis catus	ENSFCAG00000029663	1 retrocopy	retro_fcat_516,
Gorilla gorilla	ENSGGOG00000001404	1 retrocopy	retro_ggor_275,
Macropus eugenii	ENSMEUG00000014609	1 retrocopy	retro_meug_23,
Microcebus murinus	ENSMICG00000003789	1 retrocopy	retro_mmur_893,
Myotis lucifugus	ENSMLUG00000013128	1 retrocopy	retro_mluc_209,
Myotis lucifugus	ENSMLUG00000023651	2 retrocopies	retro_mluc_1137, retro_mluc_354 ,
Macaca mulatta	ENSMMUG00000023694	1 retrocopy	retro_mmul_401,
Mus musculus	ENSMUSG00000006728	5 retrocopies	retro_mmus_1219, retro_mmus_1298, retro_mmus_2878, retro_mmus_3109, retro_mmus_636,
Nomascus leucogenys	ENSNLEG00000017205	1 retrocopy	retro_nleu_1847,
Pan troglodytes	ENSPTRG00000005147	1 retrocopy	retro_ptro_180,
Tarsius syrichta	ENSTSYG00000011937	3 retrocopies	retro_tsyr_1383, retro_tsyr_1701, retro_tsyr_544,