Parental gene:

CDK4, ENSCPOG00000002670

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_9:40073416..40075344(+)


>ENSCPOG00000002670
ATGGCTACCTCTCGATATGAGCCAGTGGCTGAAATTGGTGTTGGTGCCTATGGGACCGTGTACAAGGCTCGAGACCCCCA
CAGTGGCCACTTCGTGGCCCTCAAGAGTGTGCGAGTACCCAATGGAGGGGGAGCTGGAGGAGGCCTGCCCATCAGTACAG
TACGTGAGGTGGCCTTGCTAAGGCGGCTGGAGGCATTCGAGCATCCCAATGTTGTCCGGCTGATGGATGTCTGTGCCACT
TCTCGAACTGACCGGGAGATCAAAGTGACCCTAGTGTTTGAGCATGTAGACCAAGACCTAAGGACGTATCTCGACAAAGC
ACCGCCACCAGGCTTGCCAGTTGAAACCATCAAGGATTTGATGCGCCAGTTTCTAAGAGGCCTAGATTTTCTTCATGCCA
ACTGCATCGTTCACCGAGACCTGAAACCAGAGAATATTCTGGTGACAAGTGGTGGAACTGTGAAGCTGGCAGACTTTGGC
CTAGCCCGAATCTACAGCTACCAGATGGCCCTTACACCGGTGGTGGTTACACTCTGGTACCGGGCTCCTGAAGTTCTTCT
GCAGTCTACCTATGCAACACCAGTGGACATGTGGAGTGTTGGCTGTATTTTTGCAGAGATGTTTCGTCGAAAACCTCTCT
TCTGTGGAAACTCTGAAGCTGACCAGTTGGGCAAAATCTTTGACCTGATTGGGCTGCCTCCAGAGGATGACTGGCCACGA
GATGTATCTTTACCCCGAGGAGCCTTTTCCCCCAGAGGACCTCGTCCAGTACAGTCAGTGGTACCTGAGATGGAAGAGTC
TGGAGCACAGCTACTGCTGGAGATGCTGACATTTAACCCACACAAGCGAATCTCTGCCTTCCGAGCCCTGCAGCACTCTT
ACCTACATAAGGAAGAAGGTGACCCAGAATAA

Library Parental gene expression (RPM)
SRP017611_brain 14 .03 RPM
SRP017611_kidney 36 .85 RPM
SRP017611_liver 23 .46 RPM
SRP040447_lung 44 .39 RPM
SRP040447_skeletal_muscle 16 .45 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000007160 ortholog_one2many 1 retrogene
retro_btau_738,
Callithrix jacchus ENSCJAG00000006697 possible_ortholog 3 retrogenes
retro_cjac_2163, retro_cjac_2891, retro_cjac_2951,
Cavia porcellus ENSCPOG00000005402 within_species_paralog 3 retrogenes
retro_cpor_1414, retro_cpor_1422, retro_cpor_200,
Dasypus novemcinctus ENSDNOG00000014245 ortholog_one2one 1 retrogene
retro_dnov_145,
Macropus eugenii ENSMEUG00000014609 ortholog_one2many 1 retrogene
retro_meug_23,
Myotis lucifugus ENSMLUG00000023651 possible_ortholog 2 retrogenes
retro_mluc_1137, retro_mluc_354,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_457 71.56 71.95
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Download FASTA sequences of all ENSCPOG00000002670 retrocopies