RetrogeneDB ID: retro_meug_23

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold263852:969..1884(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMEUG00000000569
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000014609
• Aliases: None
• Description: None

Sequence

>retro_meug_23
ATGGACATCCCTCGGTATGAACCAGTGGCCGAGATCGGTGTTGGTGCCTATGGGACGGTGTACAAGGCCCGTGACCCACA
CAGCGGCCACTTCGTGGCACTCAAGAGCGTGAAAGTCCCGACGGGAGGAGGAAGTGCAGGGGGCCTGCCTGTCAGCACTG
TCCGGGAGGTGGCCCTCCTTAGGAGGCTGGAGGCCTTTGAGCATCCCAACGTGGTCCGGCTGATGGATGTCTGTGCCACT
GCCCGAACTGACCGAGAGACCAAGGTGACCCTAGTGTTTGAACACGTGGACCAAGACCTGAGGACGTATCTGGACAAGGC
CCCTCCACCAGGGCTGCCCTTGGAGACCATTAAGGACCTAATGAGACAGTTCTTAAGAGGCCTAGACTTTCTTCATGCCA
ACTGTATTGTCCACCGTGACTTGAAGCCAGAAAACATACTTGTGACTAGTAGTGGAACAGTCAAGCTGGCTGACTTTGGC
TTAGCCAGGATCTACAGCTGCCAGATGGCACTCACACCTGTGGTAGTCACCCTCTGGTACAGGGCTCCTGAGGTTCTCCT
GCAGTCAGCATATGCAACACCTGTGGACATGTGGAGTGTTGGCTGCATCTTCGCAGAGATGTTCCGTAGGAAGCCTCTCT
TCTGTGGAAACTCTGAAGCTGACCAGTTAAGCAAAATCTTTGACCTGATTGGGCTCCCAGCAGAAGATGATTGGCCTCCT
GATGTTTCTCTGCCCCGTGGAGCCTTTACTCCTTGTAGTCCTCAGCCTTTACAGTCTGTTGTGCCTGAGCTGGAGGGGCC
TGGAGCACAACTGCTACTTGAAATGCTGACCTTTAGCCCCCACAAACGAATCTCTGCCTTTCGAGCTCTGCAGCACACTT
ATCTACAGACAGCTGGGGAAGGGAACCCAGAATGA

Alignment

ORF - retro_meug_23 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 99.52 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MDIPRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVKVPTGGGSGGGLPVSTVREVALLRRLEAFEHPN
          MDIPRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVKVPTGGGS.GGLPVSTVREVALLRRLEAFEHPN
Retrocopy MDIPRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVKVPTGGGSAGGLPVSTVREVALLRRLEAFEHPN

Parental  VVRLMDVCATARTDRETKVTLVFEHVDQDLRTYLDKAPPPGLPLETIKDLMRQFLRGLDFLHANCIVHRD
          VVRLMDVCATARTDRETKVTLVFEHVDQDLRTYLDKAPPPGLPLETIKDLMRQFLRGLDFLHANCIVHRD
Retrocopy VVRLMDVCATARTDRETKVTLVFEHVDQDLRTYLDKAPPPGLPLETIKDLMRQFLRGLDFLHANCIVHRD

Parental  LKPENILVTSSGTVKLADFGLARIYSCQMALTPVVVTLWYRAPEVLLQSAYATPVDMWSVGCIFAEMFRR
          LKPENILVTSSGTVKLADFGLARIYSCQMALTPVVVTLWYRAPEVLLQSAYATPVDMWSVGCIFAEMFRR
Retrocopy LKPENILVTSSGTVKLADFGLARIYSCQMALTPVVVTLWYRAPEVLLQSAYATPVDMWSVGCIFAEMFRR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_23 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_23 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 16 parental genes, and 28 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000007160	1 retrocopy	retro_btau_738,
Canis familiaris	ENSCAFG00000000280	1 retrocopy	retro_cfam_690,
Callithrix jacchus	ENSCJAG00000006697	3 retrocopies	retro_cjac_2163, retro_cjac_2891, retro_cjac_2951,
Cavia porcellus	ENSCPOG00000002670	1 retrocopy	retro_cpor_457,
Dasypus novemcinctus	ENSDNOG00000014245	1 retrocopy	retro_dnov_145,
Felis catus	ENSFCAG00000029663	1 retrocopy	retro_fcat_516,
Gorilla gorilla	ENSGGOG00000001404	1 retrocopy	retro_ggor_275,
Macropus eugenii	ENSMEUG00000000815	4 retrocopies	retro_meug_1371, retro_meug_2186, retro_meug_553, retro_meug_789,
Macropus eugenii	ENSMEUG00000014609	1 retrocopy	retro_meug_23 ,
Microcebus murinus	ENSMICG00000003789	1 retrocopy	retro_mmur_893,
Myotis lucifugus	ENSMLUG00000023651	2 retrocopies	retro_mluc_1137, retro_mluc_354,
Macaca mulatta	ENSMMUG00000023694	1 retrocopy	retro_mmul_401,
Mus musculus	ENSMUSG00000006728	5 retrocopies	retro_mmus_1219, retro_mmus_1298, retro_mmus_2878, retro_mmus_3109, retro_mmus_636,
Nomascus leucogenys	ENSNLEG00000017205	1 retrocopy	retro_nleu_1847,
Pan troglodytes	ENSPTRG00000005147	1 retrocopy	retro_ptro_180,
Tarsius syrichta	ENSTSYG00000011937	3 retrocopies	retro_tsyr_1383, retro_tsyr_1701, retro_tsyr_544,