RetrogeneDB ID: | retro_cfam_1552 | ||
Retrocopy location | Organism: | Dog (Canis familiaris) | |
| Coordinates: | 34:13027619..13027982(-) | ||
| Located in intron of: | ENSCAFG00000030143 | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | FAM60A | ||
| Ensembl ID: | ENSCAFG00000010685 | ||
| Aliases: | None | ||
| Description: | family with sequence similarity 60, member A [Source:HGNC Symbol;Acc:30702] |
| Percent Identity: | 73.98 % |
| Parental protein coverage: | 53.07 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 2 |
| Parental | SGNRIKSNQISKLQKEFKRHNSDAHSTTS-SASPAQSPCY-SNQSDDGSDTEMASGSNRTPVFSFLDLTY |
| S.N.I....I.KLQKEFK.HNSDAHSTTS..AS.A.SPC..SN.SDDG.DTEMA.G.N..P.F.FL.LTY | |
| Retrocopy | SVNSIQKQGIGKLQKEFKCHNSDAHSTTS<KASLARSPCL>SNKSDDGLDTEMATGFNTMPIFLFLYLTY |
| Parental | WKRQKICCGIIYKGRFGEVLIDTHLFKPCCSNKKAAAEKPEEQGPEPLPISTQ |
| W.RQKIC.GII.KGR.GEVLIDTHLFKP.CSNKKAA.EK..EQGP.PLPISTQ | |
| Retrocopy | WNRQKICYGIISKGRLGEVLIDTHLFKPGCSNKKAAGEKSKEQGPVPLPISTQ |
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP012049_cerebellum | 0 .00 RPM | 1 .97 RPM |
| SRP017611_brain | 0 .00 RPM | 0 .48 RPM |
| SRP017611_kidney | 0 .00 RPM | 4 .62 RPM |
| SRP017611_liver | 0 .00 RPM | 0 .73 RPM |