Parental gene:

FAM60A, ENSGGOG00000015484

Aliases:None
Description:None
Organism:Gorilla (Gorilla gorilla)
Coordinates:12:31693635..31737190(-)


>ENSGGOG00000015484
ATGTTTGGTTTTCACAAGCCAAAGATGTACCGAAGTATAGAGGGCTGCTGTATTTGCAGAGCTAAGTCCTCCAGTTCTCG
ATTCACTGACAGTAAACGCTATGAAAAGGACTTCCAGAGCTGTTTTGGATTGCATGAGACTCGTTCAGGAGACATCTGCA
ATGCCTGTGTCCTGCTTGTGAAAAGATGGAAGAAGTTGCCAGCAGGATCAAAAAAAAACTGGAATCATGTGGTAGATGCA
AGGGCTGGACCCAGTCTAAAGACTACATTGAAACCAAAGAAAGTGAAAACTCTATCTGGGAACAGGATAAAAAGCAACCA
GATCAGTAAACTGCAGAAGGAATTTAAACGTCATAATTCTGATGCTCACAGTACCACCTCAAGTGCCTCCCCAGCTCAAT
CTCCTTGTTACAGTAACCAGTCAGATGACGGCTCAGATACAGAGATGGCTTCTGGTTCTAACAGAACACCAGTTTTTTCC
TTTTTAGATCTCACATACTGGAAAAGACAGAAGATATGTTGTGGGATCATCTATAAAGGCCGTTTTGGGGAAGTCCTCAT
TGACACACATCTCTTCAAGCCTTGCTGCAGCAATAAGAAAGCAGCTGCCGAGAAGCCAGAGGAGCAGGGGCCAGAGCCTC
TGCCCATCTCCACTCAGGAGTGGTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 0 .48 RPM
SRP007412_cerebellum 1 .14 RPM
SRP007412_heart 0 .50 RPM
SRP007412_kidney 5 .72 RPM
SRP007412_liver 1 .00 RPM
SRP007412_testis 14 .40 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000001161 ortholog_one2one 1 retrogene
retro_btau_1020,
Canis familiaris ENSCAFG00000010685 ortholog_one2one 4 retrogenes
retro_cfam_1120, retro_cfam_1552, retro_cfam_1692, retro_cfam_1837,
Choloepus hoffmanni ENSCHOG00000007193 ortholog_one2one 17 retrogenes
retro_chof_109, retro_chof_1108, retro_chof_1136, retro_chof_1255, retro_chof_1614, retro_chof_1689, retro_chof_1770, retro_chof_1971, retro_chof_2126, retro_chof_2493, retro_chof_2576, retro_chof_2587, retro_chof_453, retro_chof_511, retro_chof_856, retro_chof_979, retro_chof_998,
Callithrix jacchus ENSCJAG00000001215 ortholog_one2many 3 retrogenes
retro_cjac_1072, retro_cjac_3154, retro_cjac_3289,
Felis catus ENSFCAG00000008955 ortholog_one2one 4 retrogenes
retro_fcat_1311, retro_fcat_1339, retro_fcat_58, retro_fcat_965,
Homo sapiens ENSG00000139146 ortholog_one2one 3 retrogenes
retro_hsap_1928, retro_hsap_1945, retro_hsap_4029,
Myotis lucifugus ENSMLUG00000009827 ortholog_one2one 3 retrogenes
retro_mluc_1663, retro_mluc_1672, retro_mluc_765,
Macaca mulatta ENSMMUG00000009155 ortholog_one2one 2 retrogenes
retro_mmul_1074, retro_mmul_2324,
Nomascus leucogenys ENSNLEG00000016487 ortholog_one2one 1 retrogene
retro_nleu_1213,
Otolemur garnettii ENSOGAG00000008927 ortholog_one2one 4 retrogenes
retro_ogar_1253, retro_ogar_1762, retro_ogar_2117, retro_ogar_251,
Pongo abelii ENSPPYG00000004396 ortholog_one2one 2 retrogenes
retro_pabe_1592, retro_pabe_3309,
Rattus norvegicus ENSRNOG00000046048 possible_ortholog 1 retrogene
retro_rnor_2858,
Rattus norvegicus ENSRNOG00000049943 possible_ortholog 2 retrogenes
retro_rnor_1121, retro_rnor_2917,
Sarcophilus harrisii ENSSHAG00000006261 ortholog_one2one 1 retrogene
retro_shar_670,
Ictidomys tridecemlineatus ENSSTOG00000007097 ortholog_one2many 1 retrogene
retro_itri_16,
Tursiops truncatus ENSTTRG00000008465 ortholog_one2one 3 retrogenes
retro_ttru_1162, retro_ttru_1498, retro_ttru_984,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ggor_1405 91.34 57.01
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2. retro_ggor_1415 92.67 66.97
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3. retro_ggor_2704 71.54 58.37
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Download FASTA sequences of all ENSGGOG00000015484 retrocopies