Parental gene:

GTF2A2, ENSSSCG00000004583

Aliases:None
Description:general transcription factor IIA, 2, 12kDa [Source:HGNC Symbol;Acc:4647]
Organism:Pig (Sus scrofa)
Coordinates:1:124288258..124316702(+)


>ENSSSCG00000004583
ATGGCATATCAGTTGTACAGAAATACTACTTTGGGAAACAGTCTTCAGGAGAGCCTCGATGAGCTTATACAGTCTCAACA
GATTACCCCGCAACTTGCCCTTCAAGTTCTCCTTCAGTTTGATAAAGCTATAAATTCAGCATTGGCACAGAGGGTCAGGA
ATAGAGTCAACTTCAGGGGCTCTCTAAATACATACAGATTCTGCGATAATGTGTGGACTTTTGTATTGAATGATGTTGAA
TTCAGAGAGGTGACAGAACTTATTAAAGTGGATAAAGTGAAAATTGTAGCCTGTGATGGTAAAAATACTGGTTCCAATAC
TACAGAATGA

Library Parental gene expression (RPM)
SRP014902_placenta 3 .19 RPM
SRP014902_testis 9 .76 RPM
SRP018288_heart 26 .27 RPM
SRP018288_kidney 24 .13 RPM
SRP018288_liver 13 .27 RPM
SRP018288_lung 11 .61 RPM
SRP018856_adipose 3 .19 RPM
SRP035408_brain 22 .68 RPM
SRP035408_liver 19 .67 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000010298 ortholog_one2one 1 retrogene
retro_btau_1649,
Canis familiaris ENSCAFG00000016665 ortholog_one2one 2 retrogenes
retro_cfam_786, retro_cfam_912,
Cavia porcellus ENSCPOG00000000816 ortholog_one2one 1 retrogene
retro_cpor_525,
Dipodomys ordii ENSDORG00000007867 ortholog_one2one 3 retrogenes
retro_dord_377, retro_dord_385, retro_dord_695,
Homo sapiens ENSG00000140307 ortholog_one2one 1 retrogene
retro_hsap_4034,
Macaca mulatta ENSMMUG00000018428 ortholog_one2one 1 retrogene
retro_mmul_2303,
Monodelphis domestica ENSMODG00000011636 ortholog_one2one 1 retrogene
retro_mdom_1563,
Otolemur garnettii ENSOGAG00000007061 ortholog_one2one 1 retrogene
retro_ogar_1752,
Ochotona princeps ENSOPRG00000012841 ortholog_one2one 1 retrogene
retro_opri_908,
Pan troglodytes ENSPTRG00000007129 ortholog_one2one 1 retrogene
retro_ptro_2734,
Rattus norvegicus ENSRNOG00000011062 ortholog_one2one 2 retrogenes
retro_rnor_1021, retro_rnor_1141,
Sorex araneus ENSSARG00000012228 ortholog_one2one 2 retrogenes
retro_sara_607, retro_sara_734,
Ictidomys tridecemlineatus ENSSTOG00000004010 ortholog_one2one 3 retrogenes
retro_itri_1631, retro_itri_440, retro_itri_925,
Tupaia belangeri ENSTBEG00000001053 ortholog_one2one 9 retrogenes
retro_tbel_1162, retro_tbel_1207, retro_tbel_123, retro_tbel_1394, retro_tbel_1439, retro_tbel_257, retro_tbel_2655, retro_tbel_2737, retro_tbel_513,
Xenopus tropicalis ENSXETG00000022002 ortholog_one2many 1 retrogene
retro_xtro_18,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_545 77.98 99.08
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2. retro_sscr_934 78.22 92.66
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3. retro_sscr_935 78.22 92.66
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Download FASTA sequences of all ENSSSCG00000004583 retrocopies