Parental gene:

ENSOCUG00000025604

Aliases:None
Description:None
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:GL019220:108780..109812(-)


>ENSOCUG00000025604
TGCCTGAGCGAGGACAAGAAGAACATCGTGCTGGAGGAGGGCAAGGAGATCCTGGTGGGCGACGTGGGCCAGACCGTGGA
GGACCCCTACGCCACCTTCGTGCAGATGCTGCCCGACAAGGACTGCCGCTACGCCCTCTACGACGCCACCTACGAGACCA
AGGAGAGCAAGAAGGAGGACCTGGTGTTCATCTTCTGGGCCCCCGAGTGTGCGCCCCTCAAGAGCAAAATGATCTACGCC
AGCTCCAAGGACGCCATCAAGAAGAAGCTGACAGGAATCAAGCATGAATTGCAAGCCAACTGCTACGAGGAGGTGAAGGA
CCGCTGCACCCTGGCGGAGAAGCTGGGGGGCAGCGCCGTCATCTCCCTGGAGGGCAAGCCCTTGTGA

Library Parental gene expression (RPM)
SRP017611_brain 268 .33 RPM
SRP017611_kidney 109 .57 RPM
SRP017611_liver 51 .33 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017334 possible_ortholog 2 retrogenes
retro_amel_583, retro_amel_816,
Bos taurus ENSBTAG00000021455 possible_ortholog 1 retrogene
retro_btau_1382,
Canis familiaris ENSCAFG00000024955 possible_ortholog 6 retrogenes
retro_cfam_1544, retro_cfam_366, retro_cfam_660, retro_cfam_67, retro_cfam_943, retro_cfam_964,
Callithrix jacchus ENSCJAG00000001916 possible_ortholog 1 retrogene
retro_cjac_347,
Equus caballus ENSECAG00000019900 possible_ortholog 1 retrogene
retro_ecab_442,
Felis catus ENSFCAG00000013272 possible_ortholog 3 retrogenes
retro_fcat_1456, retro_fcat_303, retro_fcat_991,
Homo sapiens ENSG00000172757 possible_ortholog 6 retrogenes
retro_hsap_2617, retro_hsap_287, retro_hsap_3333, retro_hsap_336, retro_hsap_384, retro_hsap_400,
Gorilla gorilla ENSGGOG00000023183 possible_ortholog 5 retrogenes
retro_ggor_1832, retro_ggor_326, retro_ggor_357, retro_ggor_389, retro_ggor_397,
Microcebus murinus ENSMICG00000012763 possible_ortholog 1 retrogene
retro_mmur_703,
Myotis lucifugus ENSMLUG00000024685 possible_ortholog 6 retrogenes
retro_mluc_1905, retro_mluc_2114, retro_mluc_216, retro_mluc_2218, retro_mluc_455, retro_mluc_507,
Macaca mulatta ENSMMUG00000019016 possible_ortholog 5 retrogenes
retro_mmul_316, retro_mmul_493, retro_mmul_556, retro_mmul_667, retro_mmul_705,
Mustela putorius furo ENSMPUG00000011502 possible_ortholog 2 retrogenes
retro_mputfur_1485, retro_mputfur_575,
Mus musculus ENSMUSG00000056201 possible_ortholog 6 retrogenes
retro_mmus_1729, retro_mmus_2103, retro_mmus_3127, retro_mmus_3556, retro_mmus_719, retro_mmus_970,
Nomascus leucogenys ENSNLEG00000005852 possible_ortholog 5 retrogenes
retro_nleu_139, retro_nleu_1494, retro_nleu_1571, retro_nleu_1777, retro_nleu_636,
Oryctolagus cuniculus ENSOCUG00000009383 within_species_paralog 1 retrogene
retro_ocun_1397,
Oryctolagus cuniculus ENSOCUG00000027456 within_species_paralog 1 retrogene
retro_ocun_1891,
Otolemur garnettii ENSOGAG00000016503 possible_ortholog 8 retrogenes
retro_ogar_1442, retro_ogar_1581, retro_ogar_1648, retro_ogar_2192, retro_ogar_302, retro_ogar_405, retro_ogar_453, retro_ogar_828,
Pongo abelii ENSPPYG00000003047 possible_ortholog 5 retrogenes
retro_pabe_1732, retro_pabe_2747, retro_pabe_316, retro_pabe_325, retro_pabe_386,
Pan troglodytes ENSPTRG00000003895 possible_ortholog 5 retrogenes
retro_ptro_1764, retro_ptro_2146, retro_ptro_236, retro_ptro_298, retro_ptro_306,
Rattus norvegicus ENSRNOG00000020660 possible_ortholog 2 retrogenes
retro_rnor_1354, retro_rnor_693,
Ictidomys tridecemlineatus ENSSTOG00000027968 possible_ortholog 4 retrogenes
retro_itri_144, retro_itri_1456, retro_itri_1734, retro_itri_685,
Tupaia belangeri ENSTBEG00000016751 possible_ortholog 2 retrogenes
retro_tbel_153, retro_tbel_3085,
Tursiops truncatus ENSTTRG00000016931 possible_ortholog 2 retrogenes
retro_ttru_1256, retro_ttru_598,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_324 87.10 71.09
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2. retro_ocun_478 94.12 66.41
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3. retro_ocun_1123 94.57 100.00
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4. retro_ocun_1390 74.62 100.00
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Download FASTA sequences of all ENSOCUG00000025604 retrocopies