Parental gene:

CFL1, ENSPTRG00000003895

Aliases:None
Description:cofilin 1 (non-muscle) [Source:HGNC Symbol;Acc:1874]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:11:63805704..63809203(-)


>ENSPTRG00000003895
ATGGCCTCCGGTGTGGCTGTCTCTGATGGTGTCATCAAGGTGTTCAACGACATGAAGGTGCGTAAGTCTTCAACGCCAGA
GGAGGTGAAGAAGCGCAAGAAGGCGGTGCTCTTCTGCCTGAGTGAGGACAAGAAGAACATCATCCTGGAGGAGGGCAAGG
AGATCCTGGTGGGCGATGTGGGCCAGACTGTCGACGACCCCTACGCCACCTTTGTCAAGATGCTGCCAGATAAGGACTGC
CGCTATGCCCTCTATGATGCAACCTATGAGACCAAGGAGAGCAAGAAGGAGGACCTGGTGTTTATCTTCTGGGCCCCCGA
GTCTGCGCCCCTTAAGAGCAAAATGATTTATGCCAGCTCCAAGGACGCCATCAAGAAGAAGCTGACAGGGATCAAGCATG
AATTGCAAGCAAACTGCTACGAGGAGGTCAAGGACCGCTGCACCCTGGCAGAGAAGCTGGGGGGCAGTGCCGTCATCTCC
CTGGAGGGCAAGCCTTTGTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 403 .03 RPM
SRP007412_cerebellum 306 .79 RPM
SRP007412_heart 68 .29 RPM
SRP007412_kidney 304 .15 RPM
SRP007412_liver 324 .66 RPM
SRP007412_testis 79 .88 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017334 ortholog_one2one 2 retrogenes
retro_amel_583, retro_amel_816,
Canis familiaris ENSCAFG00000024955 ortholog_one2one 6 retrogenes
retro_cfam_1544, retro_cfam_366, retro_cfam_660, retro_cfam_67, retro_cfam_943, retro_cfam_964,
Callithrix jacchus ENSCJAG00000001916 ortholog_one2one 1 retrogene
retro_cjac_347,
Equus caballus ENSECAG00000019900 ortholog_one2one 1 retrogene
retro_ecab_442,
Felis catus ENSFCAG00000013272 possible_ortholog 3 retrogenes
retro_fcat_1456, retro_fcat_303, retro_fcat_991,
Homo sapiens ENSG00000172757 ortholog_one2one 6 retrogenes
retro_hsap_2617, retro_hsap_287, retro_hsap_3333, retro_hsap_336, retro_hsap_384, retro_hsap_400,
Gorilla gorilla ENSGGOG00000023183 ortholog_one2one 5 retrogenes
retro_ggor_1832, retro_ggor_326, retro_ggor_357, retro_ggor_389, retro_ggor_397,
Myotis lucifugus ENSMLUG00000024685 ortholog_one2one 6 retrogenes
retro_mluc_1905, retro_mluc_2114, retro_mluc_216, retro_mluc_2218, retro_mluc_455, retro_mluc_507,
Macaca mulatta ENSMMUG00000019016 possible_ortholog 5 retrogenes
retro_mmul_316, retro_mmul_493, retro_mmul_556, retro_mmul_667, retro_mmul_705,
Mustela putorius furo ENSMPUG00000011502 ortholog_one2one 2 retrogenes
retro_mputfur_1485, retro_mputfur_575,
Nomascus leucogenys ENSNLEG00000005852 ortholog_one2one 5 retrogenes
retro_nleu_139, retro_nleu_1494, retro_nleu_1571, retro_nleu_1777, retro_nleu_636,
Oryctolagus cuniculus ENSOCUG00000025604 possible_ortholog 4 retrogenes
retro_ocun_1123, retro_ocun_1390, retro_ocun_324, retro_ocun_478,
Otolemur garnettii ENSOGAG00000016503 possible_ortholog 8 retrogenes
retro_ogar_1442, retro_ogar_1581, retro_ogar_1648, retro_ogar_2192, retro_ogar_302, retro_ogar_405, retro_ogar_453, retro_ogar_828,
Pongo abelii ENSPPYG00000003047 ortholog_one2one 5 retrogenes
retro_pabe_1732, retro_pabe_2747, retro_pabe_316, retro_pabe_325, retro_pabe_386,
Pan troglodytes ENSPTRG00000013275 within_species_paralog 1 retrogene
retro_ptro_659,
Rattus norvegicus ENSRNOG00000020660 possible_ortholog 2 retrogenes
retro_rnor_1354, retro_rnor_693,
Ictidomys tridecemlineatus ENSSTOG00000027968 ortholog_one2one 4 retrogenes
retro_itri_144, retro_itri_1456, retro_itri_1734, retro_itri_685,
Tursiops truncatus ENSTTRG00000016931 ortholog_one2one 2 retrogenes
retro_ttru_1256, retro_ttru_598,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_236 64.52 90.36
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2. retro_ptro_298 86.14 100.00
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3. retro_ptro_306 83.33 97.59
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4. retro_ptro_1764 70.48 98.80
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5. retro_ptro_2146 78.18 97.59
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Download FASTA sequences of all ENSPTRG00000003895 retrocopies