Parental gene:

CFL1, ENSSTOG00000027968

Aliases:None
Description:cofilin 1 (non-muscle) [Source:HGNC Symbol;Acc:1874]
Organism:Squirrel (Ictidomys tridecemlineatus)
Coordinates:JH393409.1:3680832..3682294(+)


>ENSSTOG00000027968
GCTTCTGGTGTGGCTGTCTCTGATGGCGTCATCAAGGTATTCAATGATATGAAGGTACGCAAATCTTCAACGCCAGAGGA
AGTGAAGAAGCGTAAGAAGGCAGTGCTGTTCTGCCTGAGTGAGGACAAGAAGAACATCATCTTGGAGGAGGGCAAGGAGA
TCCTGGTAGGTGATGTGGGCCAGACTGTGGATGATCCCTACGCCACCTTTGTCAAGATGCTGCCAGACAAGGACTGCCGC
TATGCCCTCTATGATGCTACCTATGAGACCAAGGAGAGCAAGAAAGAGGACCTGGTGTTTATCTTCTGGGCCCCTGAATC
CGCACCCCTTAAGAGCAAAATGATCTATGCTAGTTCCAAGGACGCCATCAAGAAGAAGCTGACAGGGATCAAGCACGAAT
TACAAGCAAACTGCTATGAGGAGGTCAAGGACCGCTGCACCCTGGCTGAAAAACTGGGGGGCAGTGCCGTCATCTCTCTG
GAGGGCAAGCCTTTGCCCCCTCCAGCCCCCTGCCTGGAGCATCTGAGCCCCAGACCTGCCCTAGGGGGTTGCAGGCTGCC
CCCTTCCTGCCAGACCGGAGGGGCTGGGGGGATCCCAGCAGGGGGAGGGCATTCCCTTCACCCCAGTTGCCAAACAGCCC
CCCCACCCCCTGGACCTTCCTCCTCCCTCCATCCCTGA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017334 ortholog_one2one 2 retrogenes
retro_amel_583, retro_amel_816,
Bos taurus ENSBTAG00000021455 possible_ortholog 1 retrogene
retro_btau_1382,
Canis familiaris ENSCAFG00000024955 ortholog_one2one 6 retrogenes
retro_cfam_1544, retro_cfam_366, retro_cfam_660, retro_cfam_67, retro_cfam_943, retro_cfam_964,
Callithrix jacchus ENSCJAG00000001916 ortholog_one2one 1 retrogene
retro_cjac_347,
Equus caballus ENSECAG00000019900 ortholog_one2one 1 retrogene
retro_ecab_442,
Felis catus ENSFCAG00000013272 possible_ortholog 3 retrogenes
retro_fcat_1456, retro_fcat_303, retro_fcat_991,
Homo sapiens ENSG00000172757 ortholog_one2one 6 retrogenes
retro_hsap_2617, retro_hsap_287, retro_hsap_3333, retro_hsap_336, retro_hsap_384, retro_hsap_400,
Gorilla gorilla ENSGGOG00000023183 ortholog_one2one 5 retrogenes
retro_ggor_1832, retro_ggor_326, retro_ggor_357, retro_ggor_389, retro_ggor_397,
Microcebus murinus ENSMICG00000012763 possible_ortholog 1 retrogene
retro_mmur_703,
Myotis lucifugus ENSMLUG00000024685 ortholog_one2one 6 retrogenes
retro_mluc_1905, retro_mluc_2114, retro_mluc_216, retro_mluc_2218, retro_mluc_455, retro_mluc_507,
Macaca mulatta ENSMMUG00000019016 possible_ortholog 5 retrogenes
retro_mmul_316, retro_mmul_493, retro_mmul_556, retro_mmul_667, retro_mmul_705,
Mustela putorius furo ENSMPUG00000011502 ortholog_one2one 2 retrogenes
retro_mputfur_1485, retro_mputfur_575,
Nomascus leucogenys ENSNLEG00000005852 ortholog_one2one 5 retrogenes
retro_nleu_139, retro_nleu_1494, retro_nleu_1571, retro_nleu_1777, retro_nleu_636,
Oryctolagus cuniculus ENSOCUG00000025604 possible_ortholog 4 retrogenes
retro_ocun_1123, retro_ocun_1390, retro_ocun_324, retro_ocun_478,
Otolemur garnettii ENSOGAG00000016503 possible_ortholog 8 retrogenes
retro_ogar_1442, retro_ogar_1581, retro_ogar_1648, retro_ogar_2192, retro_ogar_302, retro_ogar_405, retro_ogar_453, retro_ogar_828,
Pongo abelii ENSPPYG00000003047 ortholog_one2one 5 retrogenes
retro_pabe_1732, retro_pabe_2747, retro_pabe_316, retro_pabe_325, retro_pabe_386,
Pan troglodytes ENSPTRG00000003895 ortholog_one2one 5 retrogenes
retro_ptro_1764, retro_ptro_2146, retro_ptro_236, retro_ptro_298, retro_ptro_306,
Rattus norvegicus ENSRNOG00000020660 possible_ortholog 2 retrogenes
retro_rnor_1354, retro_rnor_693,
Ictidomys tridecemlineatus ENSSTOG00000001675 within_species_paralog 3 retrogenes
retro_itri_1313, retro_itri_581, retro_itri_632,
Tursiops truncatus ENSTTRG00000016931 ortholog_one2one 2 retrogenes
retro_ttru_1256, retro_ttru_598,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_itri_144 95.68 72.00
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2. retro_itri_685 71.33 60.89
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3. retro_itri_1456 61.31 72.00
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4. retro_itri_1734 77.14 75.11
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Download FASTA sequences of all ENSSTOG00000027968 retrocopies