Parental gene:

ENSECAG00000001599

Aliases:None
Description:None
Organism:Horse (Equus caballus)
Coordinates:10:78988913..78991650(+)


>ENSECAG00000001599
ATGGCCGAGGAAGGCATCGCTGCTGGAGGTGTAATGGACGTTAATACCGCCTTACAAGAGGTGCTGAAGACCGCCCTCAT
CCACGATGGCTTGGCACGTGGGATCCGCGAAGCTGCCAAGGCCCTAGACAAGCGCCAAGCCCATCTTTGTGTGCTCGCAT
CCAATTGCGATGAGCCTATGTACGTGAAGTTGGTGGAGGCCCTCTGTGCCGAGCACCAGATCAACCTGATTAAGGTTGAC
GACAACAAGAAGCTGGGGGAATGGGTAGGCCTGTGTAAAATCGACAGGGAGGGAAAGCCCCGCAAGGTGGTTGGCTGCAG
TTGTGTGGTGGTGAAGGACTACGGCAAAGAGTCTCAGGCCAAGGATGTCATCGAGGAGTACTTTAAATGCAAGAAATGA

Library Parental gene expression (RPM)
SRP021940_articular_cartilage 897 .49 RPM
SRP021940_cerebellum 300 .07 RPM
SRP021940_embryo 632 .13 RPM
SRP021940_placental_villous 461 .15 RPM
SRP021940_synovial_membrane 801 .19 RPM
SRP021940_testis 379 .82 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000010479 ortholog_one2many 1 retrogene
Ailuropoda melanoleuca ENSAMEG00000008015 possible_ortholog 2 retrogenes
Bos taurus ENSBTAG00000001360 ortholog_one2one 7 retrogenes
Canis familiaris ENSCAFG00000000190 possible_ortholog 15 retrogenes
Callithrix jacchus ENSCJAG00000002865 possible_ortholog 34 retrogenes
Cavia porcellus ENSCPOG00000000429 ortholog_one2one 4 retrogenes
Dasypus novemcinctus ENSDNOG00000006214 ortholog_one2one 31 retrogenes
Echinops telfairi ENSETEG00000006854 ortholog_one2one 14 retrogenes
Felis catus ENSFCAG00000028402 possible_ortholog 7 retrogenes
Homo sapiens ENSG00000112306 possible_ortholog 26 retrogenes
Gorilla gorilla ENSGGOG00000012234 ortholog_one2one 22 retrogenes
Gadus morhua ENSGMOG00000019455 ortholog_one2many 1 retrogene
Loxodonta africana ENSLAFG00000007933 ortholog_one2one 11 retrogenes
Macropus eugenii ENSMEUG00000004285 possible_ortholog 1 retrogene
Microcebus murinus ENSMICG00000005252 possible_ortholog 5 retrogenes
Myotis lucifugus ENSMLUG00000001137 possible_ortholog 5 retrogenes
Macaca mulatta ENSMMUG00000013237 possible_ortholog 1 retrogene
Monodelphis domestica ENSMODG00000017520 possible_ortholog 1 retrogene
Mustela putorius furo ENSMPUG00000014771 ortholog_one2one 1 retrogene
Mus musculus ENSMUSG00000061983 possible_ortholog 1 retrogene
Nomascus leucogenys ENSNLEG00000014611 possible_ortholog 4 retrogenes
Oryctolagus cuniculus ENSOCUG00000001606 ortholog_one2one 14 retrogenes
Otolemur garnettii ENSOGAG00000001309 ortholog_one2one 20 retrogenes
Pongo abelii ENSPPYG00000017020 possible_ortholog 26 retrogenes
Pelodiscus sinensis ENSPSIG00000003457 ortholog_one2many 1 retrogene
Pan troglodytes ENSPTRG00000018618 ortholog_one2one 25 retrogenes
Pteropus vampyrus ENSPVAG00000017201 ortholog_one2one 12 retrogenes
Rattus norvegicus ENSRNOG00000016411 ortholog_one2one 5 retrogenes
Sorex araneus ENSSARG00000003170 possible_ortholog 2 retrogenes
Sarcophilus harrisii ENSSHAG00000008905 possible_ortholog 6 retrogenes
Sus scrofa ENSSSCG00000004177 possible_ortholog 8 retrogenes
Tarsius syrichta ENSTSYG00000010097 possible_ortholog 24 retrogenes
Tursiops truncatus ENSTTRG00000000609 possible_ortholog 11 retrogenes
Vicugna pacos ENSVPAG00000010082 possible_ortholog 4 retrogenes
Vicugna pacos ENSVPAG00000011504 possible_ortholog 3 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_80 84.73 99.24
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2. retro_ecab_133 71.62 55.30
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3. retro_ecab_744 60.00 99.24
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4. retro_ecab_828 65.52 64.39
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5. retro_ecab_875 58.33 72.73
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6. retro_ecab_959 61.36 100.00
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7. retro_ecab_1012 75.94 100.00
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8. retro_ecab_1131 77.23 76.52
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Download FASTA sequences of all ENSECAG00000001599 retrocopies