Parental gene:

MRPS18C, ENSCPOG00000009198

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_33:4934867..4942560(-)


>ENSCPOG00000009198
ATGGCTGCCGTGGTCACTGTTTGCAGTGGTCTAGGGAGGAAGAAGTTGACACACTGGGTCACGTCTGCTGTAGGCCTCAC
AGATCCTGGAACTCACAGGGTGCTATGGAGAAGAGGTTGTTCACAGTACAAACAAGTAACCAGCGATGAAAACCTGCCTA
CTACAATGGAAAACCCTTATAAGGAACCTCTTAAGAAGTGTATCTTGTGTGGGAAACGTGTTGATTATAAGAATGTGCAG
CTTTTGTCCCAGTTTATTTCTGCATATACCGGCTGTATTCATGGGAGGCATATAACAGGTCTTTGTGGGAAAAAACAGAA
AGAAATTTCAAAAGCAATTAAGAGAGCTCAAGTAATGGGATTTATGCCAGTTACGCACAAGGATCCTGCATATCTCAAAG
ACCCTAAAGTTTGCAACATCAAATATCGGGAATAA

Library Parental gene expression (RPM)
SRP017611_brain 17 .08 RPM
SRP017611_kidney 12 .25 RPM
SRP017611_liver 16 .10 RPM
SRP040447_lung 9 .99 RPM
SRP040447_skeletal_muscle 12 .60 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000018155 ortholog_one2one 3 retrogenes
retro_btau_1386, retro_btau_309, retro_btau_502,
Callithrix jacchus ENSCJAG00000005286 ortholog_one2many 3 retrogenes
retro_cjac_1419, retro_cjac_234, retro_cjac_3970,
Dasypus novemcinctus ENSDNOG00000018326 ortholog_one2one 2 retrogenes
retro_dnov_1030, retro_dnov_152,
Homo sapiens ENSG00000163319 ortholog_one2one 5 retrogenes
retro_hsap_1540, retro_hsap_2597, retro_hsap_4019, retro_hsap_4684, retro_hsap_969,
Gorilla gorilla ENSGGOG00000008603 ortholog_one2one 2 retrogenes
retro_ggor_1173, retro_ggor_2908,
Macropus eugenii ENSMEUG00000010972 ortholog_one2one 2 retrogenes
retro_meug_104, retro_meug_1113,
Myotis lucifugus ENSMLUG00000017057 ortholog_one2one 1 retrogene
retro_mluc_2360,
Macaca mulatta ENSMMUG00000015353 ortholog_one2one 4 retrogenes
retro_mmul_2203, retro_mmul_2494, retro_mmul_655, retro_mmul_793,
Mus musculus ENSMUSG00000016833 ortholog_one2one 2 retrogenes
retro_mmus_1546, retro_mmus_2127,
Nomascus leucogenys ENSNLEG00000009119 ortholog_one2many 4 retrogenes
retro_nleu_111, retro_nleu_1614, retro_nleu_2722, retro_nleu_3010,
Ochotona princeps ENSOPRG00000004113 ortholog_one2one 2 retrogenes
retro_opri_1041, retro_opri_966,
Pongo abelii ENSPPYG00000025867 ortholog_one2many 2 retrogenes
retro_pabe_1276, retro_pabe_70,
Pan troglodytes ENSPTRG00000016233 ortholog_one2one 3 retrogenes
retro_ptro_1039, retro_ptro_1521, retro_ptro_3113,
Pteropus vampyrus ENSPVAG00000006439 ortholog_one2one 2 retrogenes
retro_pvam_1326, retro_pvam_1412,
Rattus norvegicus ENSRNOG00000002178 ortholog_one2one 3 retrogenes
retro_rnor_2264, retro_rnor_2265, retro_rnor_477,
Sarcophilus harrisii ENSSHAG00000007084 ortholog_one2one 1 retrogene
retro_shar_718,
Ictidomys tridecemlineatus ENSSTOG00000007989 ortholog_one2one 1 retrogene
retro_itri_1231,
Tupaia belangeri ENSTBEG00000012505 ortholog_one2one 3 retrogenes
retro_tbel_1755, retro_tbel_4724, retro_tbel_508,
Tarsius syrichta ENSTSYG00000012924 ortholog_one2one 1 retrogene
retro_tsyr_649,
Tursiops truncatus ENSTTRG00000004897 ortholog_one2one 2 retrogenes
retro_ttru_144, retro_ttru_1721,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_178 52.70 50.69
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Download FASTA sequences of all ENSCPOG00000009198 retrocopies