Parental gene:

ENSCJAG00000005286

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:3:110684961..110691340(-)


>ENSCJAG00000005286
ATGGCCACTATGGTTGCTGTTTGTGGTGGTCTAAGGAGGAAGAAGTTGACACACCTGGTAACCGCTGCTGTCAGCCTTAC
ACATCCCGGGATTCACACTGTGCTGTGGAGAAGAGGTTGTTCACAATATAAACAGGTAGCCAGCAATGAAGACCTGCCCA
TTCCAATGGAAAACCCTTATAAAGAACCACTTAAGAAGTGTATCTTGTGTGGAAAGCGTGTAGATTATAAGAATGTACAG
CTTTTGTCCCAGTTTGTTTCTCCATTTACTGGATGCATTTATGGAAGGCACATTACAGGTCTTTGTGGGAAGAAACAGAA
AGAAATCACAAAAGCAATTAAGAGAGCTCAAATATTGGGGTTTATGCCAGTTACATACAAGGATCCTGCATATCTCAAGG
ACCCTAAAGTTTGTAATATCAGATATCGGGAATAA

Library Parental gene expression (RPM)
SRP051959_colon 5 .88 RPM
SRP051959_heart 9 .65 RPM
SRP051959_kidney 10 .49 RPM
SRP051959_liver 13 .10 RPM
SRP051959_lung 6 .95 RPM
SRP051959_lymph_node 7 .90 RPM
SRP051959_skeletal_muscle 10 .44 RPM
SRP051959_spleen 9 .43 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000018155 ortholog_one2many 3 retrogenes
retro_btau_1386, retro_btau_309, retro_btau_502,
Cavia porcellus ENSCPOG00000009198 ortholog_one2many 1 retrogene
retro_cpor_178,
Dasypus novemcinctus ENSDNOG00000018326 ortholog_one2many 2 retrogenes
retro_dnov_1030, retro_dnov_152,
Homo sapiens ENSG00000163319 possible_ortholog 5 retrogenes
retro_hsap_1540, retro_hsap_2597, retro_hsap_4019, retro_hsap_4684, retro_hsap_969,
Gorilla gorilla ENSGGOG00000008603 possible_ortholog 2 retrogenes
retro_ggor_1173, retro_ggor_2908,
Macropus eugenii ENSMEUG00000010972 ortholog_one2many 2 retrogenes
retro_meug_104, retro_meug_1113,
Myotis lucifugus ENSMLUG00000017057 ortholog_one2many 1 retrogene
retro_mluc_2360,
Macaca mulatta ENSMMUG00000015353 ortholog_one2one 4 retrogenes
retro_mmul_2203, retro_mmul_2494, retro_mmul_655, retro_mmul_793,
Mus musculus ENSMUSG00000016833 ortholog_one2many 2 retrogenes
retro_mmus_1546, retro_mmus_2127,
Nomascus leucogenys ENSNLEG00000009119 possible_ortholog 4 retrogenes
retro_nleu_111, retro_nleu_1614, retro_nleu_2722, retro_nleu_3010,
Ochotona princeps ENSOPRG00000004113 ortholog_one2many 2 retrogenes
retro_opri_1041, retro_opri_966,
Pongo abelii ENSPPYG00000025867 possible_ortholog 2 retrogenes
retro_pabe_1276, retro_pabe_70,
Pan troglodytes ENSPTRG00000016233 possible_ortholog 3 retrogenes
retro_ptro_1039, retro_ptro_1521, retro_ptro_3113,
Pteropus vampyrus ENSPVAG00000006439 ortholog_one2many 2 retrogenes
retro_pvam_1326, retro_pvam_1412,
Rattus norvegicus ENSRNOG00000002178 ortholog_one2many 3 retrogenes
retro_rnor_2264, retro_rnor_2265, retro_rnor_477,
Sarcophilus harrisii ENSSHAG00000007084 ortholog_one2many 1 retrogene
retro_shar_718,
Ictidomys tridecemlineatus ENSSTOG00000007989 ortholog_one2many 1 retrogene
retro_itri_1231,
Tupaia belangeri ENSTBEG00000012505 ortholog_one2many 3 retrogenes
retro_tbel_1755, retro_tbel_4724, retro_tbel_508,
Tarsius syrichta ENSTSYG00000012924 ortholog_one2many 1 retrogene
retro_tsyr_649,
Tursiops truncatus ENSTTRG00000004897 ortholog_one2many 2 retrogenes
retro_ttru_144, retro_ttru_1721,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_234 86.75 57.64
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2. retro_cjac_1419 83.19 78.47
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3. retro_cjac_3970 80.00 55.56
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Download FASTA sequences of all ENSCJAG00000005286 retrocopies