Parental gene: | ENSCAFG00000004134 |
| Aliases: | None |
| Description: | None |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | 21:6038812..6048364(+) |
>ENSCAFG00000004134
ATGACAACAGCAGCTAGGCCAACTTTTGAACCTGCAAGAGGTGGGAGAGGAAAAGGAGAAGGTGATTTGAGCCAACTCTC
AAAGCAGTATTCAAGTAGAGACCTACCTTCTCATACAAAGATAAAATATAGACAAACTACTCAGGATGCCCCTGAAGAGG
TTCGCAACCGTGACTTCAGGAGGGAGCTGGAAGAGAGAGAGAGAGCTGCTGCAAGAGAAAAAAACAGAGACCGTCCAACA
AGAGAACATACAACCTCCTCGTCGGTGTCAAAGAAGCCTCGGTTAGACCAGATTCCTGCTGCCAACCTTGATGCAGATGA
TCCTCTAACAGATGAGGAAGACGAGGATGAAGATTTTGAAGAGGAGAGTGATGATGATGACACTGCAGCTCTTCTTGCAG
AACTAGAAAAAATTAAAAAAGAAAGAGCTGAAGAGCAGGCCAGGAAGGAACAAGAACAGAAAGCTGAAGAAGAAAGAATA
CGTATGGAAAACATTTTGAGTGGAAACCCTCTCCTTAATCTCACTGGTCCATCCCAGCCACAGGCCAACTTCAAAGTTAA
AAGAAGGTGGGATGATGATGTTGTTTTCAAGAACTGTGCAAAAGGTGTAGATGATCAGAAGAAAGACAAAAGATTTGTAA
ATGATACACTGCGATCTGAATTTCACAAAAAGTTCATGGAGAAATATATTAAATAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP012049_cerebellum | 22 .72 RPM |
| SRP017611_brain | 22 .23 RPM |
| SRP017611_kidney | 27 .74 RPM |
| SRP017611_liver | 9 .57 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000011392 | possible_ortholog | 1 retrogene | |
| Bos taurus | ENSBTAG00000007913 | ortholog_one2many | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000004188 | possible_ortholog | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000006249 | possible_ortholog | 1 retrogene | |
| Dipodomys ordii | ENSDORG00000011075 | ortholog_one2many | 1 retrogene | |
| Echinops telfairi | ENSETEG00000006649 | possible_ortholog | 1 retrogene | |
| Felis catus | ENSFCAG00000007826 | possible_ortholog | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000002032 | ortholog_many2many | 3 retrogenes | |
| Mus musculus | ENSMUSG00000004096 | possible_ortholog | 2 retrogenes | |
| Ornithorhynchus anatinus | ENSOANG00000010404 | ortholog_many2many | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000001629 | ortholog_one2many | 4 retrogenes | |
| Otolemur garnettii | ENSOGAG00000001686 | possible_ortholog | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000008490 | possible_ortholog | 3 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000016534 | ortholog_many2many | 5 retrogenes | |
| Tarsius syrichta | ENSTSYG00000000407 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_61 | 96.97 | 100.00 | Please wait, loading  |
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| 2. | retro_cfam_503 | 92.59 | 58.44 | Please wait, loading |
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| 3. | retro_cfam_537 | 87.01 | 100.00 | Please wait, loading |
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| 4. | retro_cfam_805 | 82.83 | 100.00 | Please wait, loading |
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| 5. | retro_cfam_1329 | 92.59 | 58.01 | Please wait, loading |
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| 6. | retro_cfam_2123 | 87.82 | 67.10 | Please wait, loading |
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Download FASTA sequences of all ENSCAFG00000004134 retrocopies