Parental gene:

CWC15, ENSCPOG00000006249

Aliases:None
Description:CWC15 spliceosome-associated protein homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:26939]
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_40:134261..142538(+)


>ENSCPOG00000006249
ATGACAACAGCAGCCAGGCCAACTTTTGAACCTGCAAGAGGTGGAAGAGGAAAAGGAGAAGGTGATTTGAGCCAACTCTC
AAAACAATATTCAAGTAGGGACCTTCCATCTCATACAAAGATAAAATACAGACAGACTACTCAGGATGCCCCTGAGGAGG
TTCGTAATCGGGACTTCAGGAGAGAACTGGAAGAGAGAGAGAGAGCTGCTGCAAGAGAAAAAAATCGGGATCGTCCAACC
CGAGAACACACAACCTCCTCTTCAGTGTCAAAGAAACCTCGGTTAGACCAGATTCCTGCTGCCAACCTTGATGCAGATGA
CCCTCTAACAGATGAGGAAGATGAAGATTTTGAAGAGGAGAGTGATGATGATGATACTGCAGCTCTTCTTGCAGAACTGG
AAAAAATTAAAAAAGAAAGAGCTGAAGAGCAGGCCAGGAAGGAACAAGAACAAAAAGCTGAAGAAGAAAGGATTCGTATG
GAAAACATTCTTAGTGGAAACCCTCTGCTTAATCTCACTGGGCCATCTCAGCCTCAGGCCAACTTCAAAGTTAAAAGAAG
GTGGGATGATGATGTTGTCTTTAAGAACTGTGCAAAAGGTGTAGATGATCAGAAGAAAGACAAAAGATTTGTAAATGATA
CACTGAGATCTGAATTTCACAAAAAGTTTATGGAGAAATATATTAAG

Library Parental gene expression (RPM)
SRP017611_brain 28 .87 RPM
SRP017611_kidney 35 .80 RPM
SRP017611_liver 27 .51 RPM
SRP040447_lung 21 .54 RPM
SRP040447_skeletal_muscle 23 .22 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000007913 possible_ortholog 1 retrogene
retro_btau_703,
Canis familiaris ENSCAFG00000004134 possible_ortholog 6 retrogenes
retro_cfam_1329, retro_cfam_2123, retro_cfam_503, retro_cfam_537, retro_cfam_61, retro_cfam_805,
Callithrix jacchus ENSCJAG00000004188 ortholog_one2one 1 retrogene
retro_cjac_2802,
Echinops telfairi ENSETEG00000006649 ortholog_one2many 1 retrogene
retro_etel_647,
Felis catus ENSFCAG00000007826 possible_ortholog 1 retrogene
retro_fcat_1416,
Myotis lucifugus ENSMLUG00000002032 possible_ortholog 3 retrogenes
retro_mluc_102, retro_mluc_2143, retro_mluc_2478,
Mus musculus ENSMUSG00000004096 ortholog_one2one 2 retrogenes
retro_mmus_2482, retro_mmus_593,
Ornithorhynchus anatinus ENSOANG00000010404 ortholog_one2many 1 retrogene
retro_oana_5,
Otolemur garnettii ENSOGAG00000001686 ortholog_one2one 2 retrogenes
retro_ogar_2476, retro_ogar_456,
Rattus norvegicus ENSRNOG00000008490 ortholog_one2many 3 retrogenes
retro_rnor_2452, retro_rnor_251, retro_rnor_476,
Sarcophilus harrisii ENSSHAG00000016534 ortholog_one2many 5 retrogenes
retro_shar_26, retro_shar_333, retro_shar_447, retro_shar_596, retro_shar_768,
Tarsius syrichta ENSTSYG00000000407 ortholog_one2many 1 retrogene
retro_tsyr_1585,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_708 50.30 69.43
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Download FASTA sequences of all ENSCPOG00000006249 retrocopies