Parental gene:

CWC15, ENSOCUG00000001629

Aliases:None
Description:CWC15 spliceosome-associated protein homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:26939]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:1:121903884..121920964(+)


>ENSOCUG00000001629
ATGACGACAGCAGCCAGACCAACTTTTGAACCTGCAAGAGGTGGAAGAGGAAAAGGGGAAGGTGATCTGAGCCAACTCTC
AAAGCAGTATTCCAGCCGAGACTTACCTTCCCATACAAAGATAAAATATAGGCAAACTACTCAGGATGCCCCTGAAGAGG
TTCGTAACCGGGACTTCAGGAGAGAGCTGGAAGAGAGAGAGAGAGCTGCTGCCAGAGAGAAAAATAGGGATCGTCCAACC
CGGGAACATACAACTTCCTCTTCAGTATCCAAGAAGCCTCGGTTAGACCAGATTCCTGCTGCCAACCTTGACGCAGATGA
TCCTTTAACAGACGAGGAAGATGAAGATTTTGAAGAGGAGAGTGATGATGATGACACTGCAGCTCTTCTTGCAGAACTGG
AAAAAATTAAAAAAGAGCGAGCTGAAGAGCAGGCCAGGAAGGAACAAGAACAAAAAGCTGAAGAAGAGAGGATCCGAATG
GAAAACATTCTGAGTGGAAATCCTCTGCTTAATCTCACTGGCCCATCCCAGCCTCAGGCCAACTTCAAAGTTAAAAGAAG
GTGGGATGATGATGTTGTCTTCAAGAACTGTGCAAAAGGTGTAGATGATCAAAAGAAAGACAAAAGATTTGTAAATGATA
CACTGCGATCTGAATTTCACAAGAAGTTTATGGAGAAATATATTAAGTAG

Library Parental gene expression (RPM)
SRP017611_brain 52 .37 RPM
SRP017611_kidney 56 .25 RPM
SRP017611_liver 12 .79 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011392 ortholog_one2one 1 retrogene
retro_amel_1913,
Bos taurus ENSBTAG00000007913 ortholog_one2one 1 retrogene
retro_btau_703,
Canis familiaris ENSCAFG00000004134 ortholog_one2many 6 retrogenes
retro_cfam_1329, retro_cfam_2123, retro_cfam_503, retro_cfam_537, retro_cfam_61, retro_cfam_805,
Dipodomys ordii ENSDORG00000011075 ortholog_one2one 1 retrogene
retro_dord_313,
Echinops telfairi ENSETEG00000006649 possible_ortholog 1 retrogene
retro_etel_647,
Felis catus ENSFCAG00000007826 ortholog_one2many 1 retrogene
retro_fcat_1416,
Myotis lucifugus ENSMLUG00000002032 ortholog_one2many 3 retrogenes
retro_mluc_102, retro_mluc_2143, retro_mluc_2478,
Ornithorhynchus anatinus ENSOANG00000010404 ortholog_one2many 1 retrogene
retro_oana_5,
Rattus norvegicus ENSRNOG00000008490 possible_ortholog 3 retrogenes
retro_rnor_2452, retro_rnor_251, retro_rnor_476,
Sarcophilus harrisii ENSSHAG00000016534 ortholog_one2many 5 retrogenes
retro_shar_26, retro_shar_333, retro_shar_447, retro_shar_596, retro_shar_768,
Tarsius syrichta ENSTSYG00000000407 possible_ortholog 1 retrogene
retro_tsyr_1585,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_679 57.94 53.71
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2. retro_ocun_743 70.87 54.15
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3. retro_ocun_1037 61.11 69.00
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4. retro_ocun_1605 51.33 63.76
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Download FASTA sequences of all ENSOCUG00000001629 retrocopies