Parental gene:

RPS7, ENSBTAG00000016224

Aliases:None
Description:40S ribosomal protein S7 [Source:UniProtKB/Swiss-Prot;Acc:A6H769]
Organism:Cow (Bos taurus)
Coordinates:8:112896492..112901718(-)


>ENSBTAG00000016224
ATGTTCAGCTCCAGTGCCAAGATTGTCAAGCCCAACGGCGAGAAGCCGGACGAGTTCGAGTCGGGGATCTCCCAGGCCCT
GCTGGAGCTGGAGATGAACTCGGACCTCAAGGCGCAGCTGCGGGAGCTGAACATCACGGCCGCCAAGGAGATCGAAGTTG
GCGGTGGCCGGAAAGCTATTATTATCTTCGTCCCCGTCCCGCAGCTGAAGTCTTTCCAGAAAATCCAGGTGCGCCTGGTG
CGCGAGCTGGAGAAGAAGTTCAGCGGGAAGCACGTCGTCTTCATCGCCCAGAGGAGAATTCTGCCTAAGCCAACTCGAAA
AAGCCGTACGAAAAATAAGCAGAAACGTCCCAGGAGCCGCACTCTGACCGCTGTGCACGACGCCATCCTGGAGGACTTGG
TTTTCCCAAGTGAGATCGTGGGCAAGAGGATCCGCGTGAAGCTGGACGGCAGCCGACTCATAAAGGTCCATCTGGACAAA
GCTCAGCAGAACAACGTGGAGCACAAGGTTGAAACGTTTTCTGGTGTCTATAAGAAGCTCACGGGCAAGGATGTTAATTT
TGAATTCCCAGAGTTTCAGTTGTAA

Library Parental gene expression (RPM)
ERP005899_liver 101 .22 RPM
ERP005899_muscle 1274 .70 RPM
SRP017611_brain 159 .24 RPM
SRP017611_kidney 356 .76 RPM
SRP017611_liver 195 .26 RPM
SRP030211_testis 352 .76 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000003263 ortholog_one2one 1 retrogene
retro_cfam_1798,
Callithrix jacchus ENSCJAG00000016462 possible_ortholog 2 retrogenes
retro_cjac_16, retro_cjac_2287,
Cavia porcellus ENSCPOG00000009795 ortholog_one2one 2 retrogenes
retro_cpor_1139, retro_cpor_773,
Felis catus ENSFCAG00000023243 possible_ortholog 2 retrogenes
retro_fcat_1534, retro_fcat_41,
Gorilla gorilla ENSGGOG00000023095 possible_ortholog 13 retrogenes
retro_ggor_2028, retro_ggor_2090, retro_ggor_2161, retro_ggor_218, retro_ggor_2452, retro_ggor_2927, retro_ggor_294, retro_ggor_2965, retro_ggor_3047, retro_ggor_346, retro_ggor_400, retro_ggor_484, retro_ggor_597,
Loxodonta africana ENSLAFG00000015087 possible_ortholog 11 retrogenes
retro_lafr_1223, retro_lafr_160, retro_lafr_217, retro_lafr_318, retro_lafr_319, retro_lafr_413, retro_lafr_514, retro_lafr_720, retro_lafr_786, retro_lafr_964, retro_lafr_970,
Myotis lucifugus ENSMLUG00000006121 possible_ortholog 1 retrogene
retro_mluc_1118,
Mus musculus ENSMUSG00000061477 ortholog_one2one 2 retrogenes
retro_mmus_271, retro_mmus_53,
Oryctolagus cuniculus ENSOCUG00000008507 ortholog_one2one 2 retrogenes
retro_ocun_203, retro_ocun_230,
Otolemur garnettii ENSOGAG00000028165 possible_ortholog 1 retrogene
retro_ogar_133,
Pongo abelii ENSPPYG00000025872 ortholog_one2one 12 retrogenes
retro_pabe_1033, retro_pabe_1555, retro_pabe_2506, retro_pabe_2982, retro_pabe_2983, retro_pabe_31, retro_pabe_313, retro_pabe_360, retro_pabe_3659, retro_pabe_3803, retro_pabe_499, retro_pabe_524,
Pan troglodytes ENSPTRG00000011615 possible_ortholog 3 retrogenes
retro_ptro_202, retro_ptro_3132, retro_ptro_58,
Pteropus vampyrus ENSPVAG00000002071 possible_ortholog 7 retrogenes
retro_pvam_1051, retro_pvam_1183, retro_pvam_1330, retro_pvam_1437, retro_pvam_207, retro_pvam_543, retro_pvam_887,
Rattus norvegicus ENSRNOG00000008551 ortholog_one2many 2 retrogenes
retro_rnor_39, retro_rnor_391,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_448 71.65 97.94
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2. retro_btau_997 67.21 94.33
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3. retro_btau_1016 74.68 78.87
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4. retro_btau_1046 81.54 100.00
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5. retro_btau_1351 78.87 100.00
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Download FASTA sequences of all ENSBTAG00000016224 retrocopies