Parental gene:

RPS7, ENSLAFG00000015087

Aliases:None
Description:None
Organism:Elephant (Loxodonta africana)
Coordinates:scaffold_20:12454865..12461951(+)


>ENSLAFG00000015087
ATGTTCAGTTCAAGCGCGAAGATTGTGAAGCCCAATGGCGAAAAGCCGGATGAGTTCGAGTCTGGCATTTCTCAAGCGCT
GCTTGAACTGGAGATGAACTCGGACTTAAAGGCTCAGTTGAGGGAGCTGAATATAACCGCAGCCAAGGAAATTGAAGTTG
GTGGTGGCCGGAAAGCTATTATAATCTTTGTTCCCGTTCCTCAACTGAAGTCTTTCCAGAAAATCCAAGTCAGGCTAGTA
CGCGAACTGGAGAAAAAGTTCAGTGGAAAGCATGTTGTCTTTATTGCTCAGAGGAGAATTCTGCCTAAACCAACTCGAAA
AAGTCGTACAAAAAATAAGCAGAAGCGTCCCAGGAGCCGTACTCTGACAGCCGTACATGACGCGATCCTTGAAGACTTGG
TCTTCCCAAGTGAGATCGTGGGCAAGAGAATCCGTGTAAAACTGGACGGCAGCCGGCTTATCAAAGTGCATTTGGACAAA
GCACAGCAGAACAATGTAGAACACAAGGTTGAAACTTTTTCTGGTGTGTATAAGAAGCTCACGGGCAAGGATGTTAATTT
TGAATTCCCAGAGTTTCAATTGTAA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000018435 possible_ortholog 2 retrogenes
retro_amel_391, retro_amel_914,
Bos taurus ENSBTAG00000016224 possible_ortholog 5 retrogenes
retro_btau_1016, retro_btau_1046, retro_btau_1351, retro_btau_448, retro_btau_997,
Canis familiaris ENSCAFG00000003263 possible_ortholog 1 retrogene
retro_cfam_1798,
Callithrix jacchus ENSCJAG00000016462 ortholog_one2many 2 retrogenes
retro_cjac_16, retro_cjac_2287,
Cavia porcellus ENSCPOG00000009795 possible_ortholog 2 retrogenes
retro_cpor_1139, retro_cpor_773,
Dasypus novemcinctus ENSDNOG00000013285 possible_ortholog 14 retrogenes
retro_dnov_1091, retro_dnov_1351, retro_dnov_1388, retro_dnov_1459, retro_dnov_1688, retro_dnov_1849, retro_dnov_1940, retro_dnov_1970, retro_dnov_238, retro_dnov_2409, retro_dnov_558, retro_dnov_582, retro_dnov_623, retro_dnov_791,
Equus caballus ENSECAG00000020253 possible_ortholog 2 retrogenes
retro_ecab_276, retro_ecab_396,
Homo sapiens ENSG00000171863 ortholog_one2one 14 retrogenes
retro_hsap_111, retro_hsap_112, retro_hsap_1242, retro_hsap_1737, retro_hsap_1837, retro_hsap_2907, retro_hsap_2925, retro_hsap_329, retro_hsap_3635, retro_hsap_404, retro_hsap_4711, retro_hsap_4760, retro_hsap_528, retro_hsap_703,
Myotis lucifugus ENSMLUG00000006121 possible_ortholog 1 retrogene
retro_mluc_1118,
Macaca mulatta ENSMMUG00000011870 possible_ortholog 7 retrogenes
retro_mmul_1831, retro_mmul_1846, retro_mmul_1929, retro_mmul_23, retro_mmul_2403, retro_mmul_2540, retro_mmul_357,
Monodelphis domestica ENSMODG00000014495 ortholog_one2many 2 retrogenes
retro_mdom_662, retro_mdom_810,
Mus musculus ENSMUSG00000061477 possible_ortholog 2 retrogenes
retro_mmus_271, retro_mmus_53,
Nomascus leucogenys ENSNLEG00000015407 possible_ortholog 10 retrogenes
retro_nleu_1505, retro_nleu_1771, retro_nleu_1783, retro_nleu_2278, retro_nleu_2346, retro_nleu_2510, retro_nleu_2892, retro_nleu_3080, retro_nleu_817, retro_nleu_835,
Oryctolagus cuniculus ENSOCUG00000008507 possible_ortholog 2 retrogenes
retro_ocun_203, retro_ocun_230,
Otolemur garnettii ENSOGAG00000028165 ortholog_one2one 1 retrogene
retro_ogar_133,
Pongo abelii ENSPPYG00000025872 possible_ortholog 12 retrogenes
retro_pabe_1033, retro_pabe_1555, retro_pabe_2506, retro_pabe_2982, retro_pabe_2983, retro_pabe_31, retro_pabe_313, retro_pabe_360, retro_pabe_3659, retro_pabe_3803, retro_pabe_499, retro_pabe_524,
Pan troglodytes ENSPTRG00000011615 ortholog_one2one 3 retrogenes
retro_ptro_202, retro_ptro_3132, retro_ptro_58,
Rattus norvegicus ENSRNOG00000008551 possible_ortholog 2 retrogenes
retro_rnor_39, retro_rnor_391,
Sus scrofa ENSSSCG00000027353 possible_ortholog 5 retrogenes
retro_sscr_136, retro_sscr_137, retro_sscr_240, retro_sscr_364, retro_sscr_956,
Ictidomys tridecemlineatus ENSSTOG00000024830 possible_ortholog 3 retrogenes
retro_itri_1147, retro_itri_1161, retro_itri_1215,
Tursiops truncatus ENSTTRG00000001616 possible_ortholog 6 retrogenes
retro_ttru_1422, retro_ttru_1659, retro_ttru_1706, retro_ttru_301, retro_ttru_323, retro_ttru_773,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_lafr_160 85.64 100.00
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2. retro_lafr_217 93.04 81.44
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3. retro_lafr_318 78.87 73.20
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4. retro_lafr_319 81.25 89.69
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5. retro_lafr_413 73.47 98.97
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6. retro_lafr_514 81.35 98.45
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7. retro_lafr_720 72.62 85.57
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8. retro_lafr_786 85.35 100.00
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9. retro_lafr_964 70.00 64.95
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10. retro_lafr_970 82.14 100.00
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11. retro_lafr_1223 92.82 100.00
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Download FASTA sequences of all ENSLAFG00000015087 retrocopies