Parental gene:

RHOA, ENSBTAG00000004279

Aliases:RHOA, ARHA
Description:Transforming protein RhoA [Source:UniProtKB/Swiss-Prot;Acc:P61585]
Organism:Cow (Bos taurus)
Coordinates:22:51277866..51323093(+)


>ENSBTAG00000004279
ATGGCTGCCATCCGGAAGAAACTGGTGATTGTTGGAGATGGAGCCTGTGGCAAGACTTGCTTGCTCATTGTCTTTAGCAA
GGACCAGTTCCCAGAGGTGTATGTCCCTACGGTGTTTGAGAACTATGTGGCAGATATTGAAGTGGATGGAAAGCAGGTAG
AGTTGGCTTTATGGGACACAGCTGGGCAGGAAGATTATGATCGCTTGAGGCCTCTCTCCTACCCGGATACCGACGTTATA
CTGATGTGTTTCTCCATTGATAGCCCTGATAGTTTAGAAAACATACCAGAAAAATGGACTCCGGAAGTCAAGCATTTCTG
TCCCAACGTGCCCATCATCCTGGTTGGGAACAAGAAGGATCTTCGAAACGACGAGCACACAAGGCGGGAGCTGGCCAAGA
TGAAGCAGGAGCCAGTAAAACCCGAAGAAGGCAGAGATATGGCAAACAGGATTGGTGCTTTTGGGTACATGGAGTGTTCA
GCAAAGACCAAAGATGGAGTGAGGGAGGTTTTTGAAATGGCCACGAGAGCTGCTCTGCAAGCCAGACGTGGGAAGAAAAA
ATCTGGGTGCCTTGTCTTGTGA

Library Parental gene expression (RPM)
ERP005899_liver 50 .61 RPM
ERP005899_muscle 199 .49 RPM
SRP017611_brain 83 .18 RPM
SRP017611_kidney 185 .16 RPM
SRP017611_liver 60 .41 RPM
SRP030211_testis 140 .81 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000008297 ortholog_one2one 1 retrogene
retro_acar_41,
Ailuropoda melanoleuca ENSAMEG00000012584 ortholog_one2one 3 retrogenes
retro_amel_101, retro_amel_1515, retro_amel_615,
Anas platyrhynchos ENSAPLG00000014687 ortholog_one2one 1 retrogene
retro_apla_10,
Bos taurus ENSBTAG00000014299 within_species_paralog 1 retrogene
retro_btau_1171,
Canis familiaris ENSCAFG00000023066 ortholog_one2many 2 retrogenes
retro_cfam_1652, retro_cfam_186,
Callithrix jacchus ENSCJAG00000003904 ortholog_one2one 3 retrogenes
retro_cjac_1306, retro_cjac_2010, retro_cjac_411,
Dasypus novemcinctus ENSDNOG00000012825 ortholog_one2one 6 retrogenes
retro_dnov_1012, retro_dnov_1814, retro_dnov_1904, retro_dnov_2090, retro_dnov_29, retro_dnov_326,
Dipodomys ordii ENSDORG00000003382 ortholog_one2one 3 retrogenes
retro_dord_1, retro_dord_18, retro_dord_538,
Felis catus ENSFCAG00000027456 ortholog_one2one 1 retrogene
retro_fcat_29,
Gasterosteus aculeatus ENSGACG00000005670 possible_ortholog 1 retrogene
retro_gacu_9,
Gallus gallus ENSGALG00000003806 ortholog_one2one 1 retrogene
retro_ggal_5,
Gorilla gorilla ENSGGOG00000012843 ortholog_one2one 1 retrogene
retro_ggor_2450,
Gadus morhua ENSGMOG00000008188 possible_ortholog 1 retrogene
retro_gmor_18,
Latimeria chalumnae ENSLACG00000016941 ortholog_one2one 1 retrogene
retro_lcha_15,
Loxodonta africana ENSLAFG00000009726 ortholog_one2one 8 retrogenes
retro_lafr_1196, retro_lafr_1197, retro_lafr_1198, retro_lafr_178, retro_lafr_203, retro_lafr_261, retro_lafr_392, retro_lafr_82,
Meleagris gallopavo ENSMGAG00000002280 ortholog_one2one 1 retrogene
retro_mgal_2,
Myotis lucifugus ENSMLUG00000013911 ortholog_one2one 6 retrogenes
retro_mluc_108, retro_mluc_193, retro_mluc_1976, retro_mluc_2553, retro_mluc_2554, retro_mluc_2555,
Macaca mulatta ENSMMUG00000012962 possible_ortholog 1 retrogene
retro_mmul_977,
Monodelphis domestica ENSMODG00000012981 possible_ortholog 2 retrogenes
retro_mdom_19, retro_mdom_294,
Mus musculus ENSMUSG00000007815 ortholog_one2one 9 retrogenes
retro_mmus_178, retro_mmus_191, retro_mmus_2041, retro_mmus_2507, retro_mmus_3728, retro_mmus_3729, retro_mmus_3964, retro_mmus_3965, retro_mmus_3966,
Nomascus leucogenys ENSNLEG00000006839 ortholog_one2one 4 retrogenes
retro_nleu_104, retro_nleu_2207, retro_nleu_377, retro_nleu_814,
Ornithorhynchus anatinus ENSOANG00000013807 ortholog_one2one 1 retrogene
retro_oana_7,
Oryctolagus cuniculus ENSOCUG00000013323 ortholog_one2one 3 retrogenes
retro_ocun_1075, retro_ocun_726, retro_ocun_854,
Otolemur garnettii ENSOGAG00000028489 ortholog_one2one 1 retrogene
retro_ogar_2340,
Oreochromis niloticus ENSONIG00000018884 possible_ortholog 1 retrogene
retro_onil_32,
Procavia capensis ENSPCAG00000009699 ortholog_one2one 3 retrogenes
retro_pcap_191, retro_pcap_202, retro_pcap_98,
Pelodiscus sinensis ENSPSIG00000015328 ortholog_one2one 1 retrogene
retro_psin_7,
Pan troglodytes ENSPTRG00000014922 ortholog_one2one 3 retrogenes
retro_ptro_10, retro_ptro_2456, retro_ptro_625,
Pteropus vampyrus ENSPVAG00000008738 ortholog_one2one 1 retrogene
retro_pvam_599,
Rattus norvegicus ENSRNOG00000050519 ortholog_one2one 3 retrogenes
retro_rnor_127, retro_rnor_2899, retro_rnor_408,
Sarcophilus harrisii ENSSHAG00000016308 ortholog_one2one 2 retrogenes
retro_shar_60, retro_shar_96,
Sus scrofa ENSSSCG00000022080 ortholog_one2one 1 retrogene
retro_sscr_72,
Ictidomys tridecemlineatus ENSSTOG00000004561 possible_ortholog 2 retrogenes
retro_itri_39, retro_itri_96,
Takifugu rubripes ENSTRUG00000011944 possible_ortholog 1 retrogene
retro_trub_19,
Tarsius syrichta ENSTSYG00000008220 possible_ortholog 3 retrogenes
retro_tsyr_1604, retro_tsyr_413, retro_tsyr_593,
Vicugna pacos ENSVPAG00000010931 ortholog_one2one 3 retrogenes
retro_vpac_130, retro_vpac_24, retro_vpac_492,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_206 85.34 98.96
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2. retro_btau_540 65.24 84.46
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Download FASTA sequences of all ENSBTAG00000004279 retrocopies