Parental gene:

ENSSTOG00000001029

Aliases:None
Description:None
Organism:Squirrel (Ictidomys tridecemlineatus)
Coordinates:JH393324.1:9995608..9996351(+)


>ENSSTOG00000001029
ATGCAGAACGACGCTGGCGAGTTCGTGGACCTGTACGTGCCGCGGAAATGCTCCGCCAGCAACCGCATCATTGGTGCCAA
GGACCACGCGTCCATCCAGATAAACGTGGCCGAGGTGGACAAGGTCACCGGCAGGTTTAACGGCCAGTTTAAGACCTACG
CTATCTGCGGGGCCATTCGCAGGATGGGCGAGTCAGATGACTCCATTCTGCGATTGGCCAAGGCAGATTGCATCGTCTCA
AAGTAA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017399 ortholog_one2many 2 retrogenes
retro_amel_1783, retro_amel_87,
Bos taurus ENSBTAG00000020795 possible_ortholog 2 retrogenes
retro_btau_174, retro_btau_1780,
Canis familiaris ENSCAFG00000012676 possible_ortholog 4 retrogenes
retro_cfam_1055, retro_cfam_1687, retro_cfam_1896, retro_cfam_28,
Callithrix jacchus ENSCJAG00000014195 possible_ortholog 5 retrogenes
retro_cjac_2266, retro_cjac_2572, retro_cjac_629, retro_cjac_82, retro_cjac_884,
Cavia porcellus ENSCPOG00000001965 possible_ortholog 4 retrogenes
retro_cpor_1156, retro_cpor_1268, retro_cpor_262, retro_cpor_584,
Erinaceus europaeus ENSEEUG00000004573 possible_ortholog 2 retrogenes
retro_eeur_235, retro_eeur_501,
Homo sapiens ENSG00000171858 possible_ortholog 6 retrogenes
retro_hsap_1179, retro_hsap_1883, retro_hsap_2300, retro_hsap_2949, retro_hsap_3026, retro_hsap_4303,
Gorilla gorilla ENSGGOG00000023745 possible_ortholog 7 retrogenes
retro_ggor_131, retro_ggor_1380, retro_ggor_1647, retro_ggor_2043, retro_ggor_2089, retro_ggor_2875, retro_ggor_917,
Latimeria chalumnae ENSLACG00000012753 ortholog_many2many 1 retrogene
retro_lcha_124,
Loxodonta africana ENSLAFG00000015793 possible_ortholog 4 retrogenes
retro_lafr_1055, retro_lafr_1237, retro_lafr_352, retro_lafr_499,
Macropus eugenii ENSMEUG00000015832 possible_ortholog 2 retrogenes
retro_meug_1221, retro_meug_466,
Microcebus murinus ENSMICG00000012997 possible_ortholog 5 retrogenes
retro_mmur_110, retro_mmur_1388, retro_mmur_264, retro_mmur_55, retro_mmur_965,
Myotis lucifugus ENSMLUG00000000346 ortholog_one2one 3 retrogenes
retro_mluc_1009, retro_mluc_2136, retro_mluc_2282,
Macaca mulatta ENSMMUG00000005006 possible_ortholog 8 retrogenes
retro_mmul_1006, retro_mmul_1043, retro_mmul_1138, retro_mmul_1279, retro_mmul_1331, retro_mmul_1948, retro_mmul_588, retro_mmul_633,
Monodelphis domestica ENSMODG00000016769 ortholog_one2many 1 retrogene
retro_mdom_464,
Mus musculus ENSMUSG00000039001 possible_ortholog 11 retrogenes
retro_mmus_1100, retro_mmus_1324, retro_mmus_1482, retro_mmus_1510, retro_mmus_1688, retro_mmus_1837, retro_mmus_2039, retro_mmus_2071, retro_mmus_2243, retro_mmus_576, retro_mmus_992,
Ornithorhynchus anatinus ENSOANG00000003361 ortholog_one2many 2 retrogenes
retro_oana_102, retro_oana_107,
Otolemur garnettii ENSOGAG00000016673 possible_ortholog 12 retrogenes
retro_ogar_1013, retro_ogar_1339, retro_ogar_1742, retro_ogar_2111, retro_ogar_2176, retro_ogar_2532, retro_ogar_2703, retro_ogar_2921, retro_ogar_3119, retro_ogar_3214, retro_ogar_3256, retro_ogar_719,
Ochotona princeps ENSOPRG00000000937 possible_ortholog 1 retrogene
retro_opri_996,
Pongo abelii ENSPPYG00000011205 possible_ortholog 8 retrogenes
retro_pabe_1562, retro_pabe_157, retro_pabe_2446, retro_pabe_2505, retro_pabe_3503, retro_pabe_365, retro_pabe_710, retro_pabe_986,
Pan troglodytes ENSPTRG00000013708 possible_ortholog 1 retrogene
retro_ptro_42,
Pteropus vampyrus ENSPVAG00000003548 possible_ortholog 2 retrogenes
retro_pvam_1362, retro_pvam_1368,
Rattus norvegicus ENSRNOG00000006325 possible_ortholog 2 retrogenes
retro_rnor_128, retro_rnor_172,
Sus scrofa ENSSSCG00000021825 ortholog_one2one 1 retrogene
retro_sscr_7,
Tarsius syrichta ENSTSYG00000007061 possible_ortholog 5 retrogenes
retro_tsyr_105, retro_tsyr_123, retro_tsyr_1502, retro_tsyr_2157, retro_tsyr_951,
Tursiops truncatus ENSTTRG00000011105 possible_ortholog 6 retrogenes
retro_ttru_1058, retro_ttru_1418, retro_ttru_1707, retro_ttru_1749, retro_ttru_1773, retro_ttru_674,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_itri_82 64.86 91.36
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2. retro_itri_637 71.19 72.84
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3. retro_itri_849 57.50 98.77
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4. retro_itri_1027 78.05 100.00
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5. retro_itri_1487 70.59 83.95
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Download FASTA sequences of all ENSSTOG00000001029 retrocopies