Parental gene:

ENSSSCG00000007947

Aliases:None
Description:None
Organism:Pig (Sus scrofa)
Coordinates:3:39073073..39074932(-)


>ENSSSCG00000007947
GCCAAGTACCTGGCCCAGATCATCGTGATGGGCGTGCAGGTGGTGGGTAGGGCCTTTGCCCGCGCCCTGCGCCAGGAGTT
TGCAGCCAGCCGGGCAGCAGCTGATGCACGGGGACGTGCCGGACACCAGTCTGCAGCCGCCTCCAACCTCTCTGGCCTCA
GCCTCCAGGAGGCCCAGCAGATTCTCAATGTCTCCAAGCTGAGCCCCGAGGAGATCCAGAAGAACTACGAACACCTCTTC
AAAGTGAATGACAAATCCGTGGGTGGCTCCTTCTACCTGCAGTCAAAGGTGGTCCGCGCGAAGGAGCGGCTTGAGGAGGA
ACTCCGCATCCAGGCCCAGGAGGACAGAGAGCGCCAGCAGACGCCCGGAACGTGA

Library Parental gene expression (RPM)
SRP014902_placenta 8 .49 RPM
SRP014902_testis 6 .93 RPM
SRP018856_adipose 8 .69 RPM
SRP018288_kidney 12 .61 RPM
SRP018288_lung 9 .06 RPM
SRP018288_liver 8 .80 RPM
SRP018288_heart 17 .13 RPM
SRP035408_liver 5 .99 RPM
SRP035408_brain 6 .92 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000009200 ortholog_one2many 1 retrogene
retro_btau_1664,
Canis familiaris ENSCAFG00000019226 ortholog_one2many 1 retrogene
retro_cfam_1967,
Callithrix jacchus ENSCJAG00000019772 ortholog_one2many 1 retrogene
retro_cjac_1148,
Dasypus novemcinctus ENSDNOG00000010921 ortholog_many2many 2 retrogenes
retro_dnov_1361, retro_dnov_8,
Dipodomys ordii ENSDORG00000014888 ortholog_one2many 1 retrogene
retro_dord_81,
Equus caballus ENSECAG00000019387 ortholog_one2many 1 retrogene
retro_ecab_302,
Erinaceus europaeus ENSEEUG00000007432 ortholog_one2many 7 retrogenes
retro_eeur_138, retro_eeur_171, retro_eeur_213, retro_eeur_234, retro_eeur_273, retro_eeur_440, retro_eeur_673,
Echinops telfairi ENSETEG00000006416 ortholog_one2many 1 retrogene
retro_etel_2070,
Felis catus ENSFCAG00000027971 ortholog_one2many 1 retrogene
retro_fcat_520,
Myotis lucifugus ENSMLUG00000008921 ortholog_one2many 6 retrogenes
retro_mluc_2446, retro_mluc_2447, retro_mluc_2448, retro_mluc_2516, retro_mluc_2517, retro_mluc_429,
Mus musculus ENSMUSG00000014301 ortholog_many2many 1 retrogene
retro_mmus_73,
Rattus norvegicus ENSRNOG00000004608 ortholog_one2many 1 retrogene
retro_rnor_713,
Ictidomys tridecemlineatus ENSSTOG00000003461 ortholog_one2many 1 retrogene
retro_itri_1732,
Tupaia belangeri ENSTBEG00000001347 ortholog_one2many 1 retrogene
retro_tbel_3190,
Tarsius syrichta ENSTSYG00000009306 ortholog_one2many 1 retrogene
retro_tsyr_282,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_468 71.84 83.06
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2. retro_sscr_1090 71.84 83.06
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Download FASTA sequences of all ENSSSCG00000007947 retrocopies