Parental gene:

PAM16, ENSECAG00000019387

Aliases:None
Description:presequence translocase-associated motor 16 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:29679]
Organism:Horse (Equus caballus)
Coordinates:13:38607187..38614362(+)


>ENSECAG00000019387
ATGGCCAAGTACCTGGCCCAGATCATCGTGATGGGGGCGCAGGTGGTGGGCAGGGCCTTCGCCCGGGCCCTGCGGCAGGA
GTTTGCAGCCAGCCGGGCAGCAGCTGATGCCCGGGGACGCGCCGGACACCAGTCTGCAGCCGCCTCCAACCTCTCTGGCC
TCAGCCTCCAGGAGGCACAGCAGATTCTCAACGTCTCCAAGCTGAGCCCCGAGGAGATCCAGAAGAACTACGAACACCTT
TTCAAGGTGAACGATAAATCCGTGGGCGGTTCCTTCTACCTGCAGTCAAAGGTAGTTCGAGCGAAGGAGCGCCTTGATGA
GGAACTCAGAATCCAGGCCCAGGAGGACAGAGAGAGAGAGCAGACGCCCCCAACGTGA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 6 .42 RPM
SRP021940_embryo 10 .89 RPM
SRP021940_cerebellum 13 .50 RPM
SRP021940_testis 47 .38 RPM
SRP021940_placental_villous 5 .68 RPM
SRP021940_articular_cartilage 7 .85 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000009200 ortholog_one2one 1 retrogene
retro_btau_1664,
Canis familiaris ENSCAFG00000019226 ortholog_one2one 1 retrogene
retro_cfam_1967,
Callithrix jacchus ENSCJAG00000019772 ortholog_one2one 1 retrogene
retro_cjac_1148,
Dasypus novemcinctus ENSDNOG00000010921 ortholog_one2many 2 retrogenes
retro_dnov_1361, retro_dnov_8,
Dipodomys ordii ENSDORG00000014888 ortholog_one2one 1 retrogene
retro_dord_81,
Erinaceus europaeus ENSEEUG00000007432 ortholog_one2one 7 retrogenes
retro_eeur_138, retro_eeur_171, retro_eeur_213, retro_eeur_234, retro_eeur_273, retro_eeur_440, retro_eeur_673,
Echinops telfairi ENSETEG00000006416 ortholog_one2one 1 retrogene
retro_etel_2070,
Felis catus ENSFCAG00000027971 ortholog_one2one 1 retrogene
retro_fcat_520,
Myotis lucifugus ENSMLUG00000008921 ortholog_one2one 6 retrogenes
retro_mluc_2446, retro_mluc_2447, retro_mluc_2448, retro_mluc_2516, retro_mluc_2517, retro_mluc_429,
Mus musculus ENSMUSG00000014301 ortholog_one2many 1 retrogene
retro_mmus_73,
Rattus norvegicus ENSRNOG00000004608 ortholog_one2one 1 retrogene
retro_rnor_713,
Sus scrofa ENSSSCG00000007947 ortholog_one2many 2 retrogenes
retro_sscr_1090, retro_sscr_468,
Ictidomys tridecemlineatus ENSSTOG00000003461 ortholog_one2one 1 retrogene
retro_itri_1732,
Tupaia belangeri ENSTBEG00000001347 ortholog_one2one 1 retrogene
retro_tbel_3190,
Tarsius syrichta ENSTSYG00000009306 ortholog_one2one 1 retrogene
retro_tsyr_282,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_302 59.46 59.20
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Download FASTA sequences of all ENSECAG00000019387 retrocopies